In [1]:
library(Seurat)
library(dplyr)
library(magrittr)
IRdisplay::display_html("<style> .container { width:95% !important; } </style>")
library("xlsx")
library(ggplot2)
Attaching package: ‘dplyr’


The following objects are masked from ‘package:stats’:

    filter, lag


The following objects are masked from ‘package:base’:

    intersect, setdiff, setequal, union


In [2]:
bcc_all_metadata<-readRDS("/media/garret/New Volume/scRNAseq_data/Personalis/bcc_all_metadata.rds")
bcc_scRNA_counts<-readRDS("/media/garret/New Volume/scRNAseq_data/Personalis/bcc_scRNA_counts.rds")
bcc_tcell_metadata<-readRDS("/media/garret/New Volume/scRNAseq_data/Personalis/bcc_tcell_metadata.rds")
bcc_tcr<-readRDS("/media/garret/New Volume/scRNAseq_data/Personalis/bcc_tcr.rds")
In [3]:
dim(bcc_all_metadata)
dim(bcc_scRNA_counts)
dim(bcc_tcell_metadata)
dim(bcc_tcr)
  1. 53030
  2. 7
  1. 23309
  2. 53030
  1. 33106
  2. 6
  1. 28408
  2. 2
In [4]:
unique(bcc_all_metadata$treatment)
unique(bcc_all_metadata$patient)
  1. 'post'
  2. 'pre'
  1. 'su001'
  2. 'su002'
  3. 'su003'
  4. 'su004'
  5. 'su005'
  6. 'su006'
  7. 'su007'
  8. 'su008'
  9. 'su009'
  10. 'su010'
  11. 'su012'

Joint Clustering of 22 samples using Seurat V3

In [39]:
all<-CreateSeuratObject(counts = bcc_scRNA_counts, min.cells = 3, min.features = 200, project = "Yost")
Warning message:
“Feature names cannot have underscores ('_'), replacing with dashes ('-')”
In [40]:
mito.features <- grep(pattern = "^MT-", x = rownames(x = all), value = TRUE)
percent.mito <- Matrix::colSums(x = GetAssayData(object = all, slot = 'counts')[mito.features, ]) / Matrix::colSums(x = GetAssayData(object = all, slot = 'counts'))
all[['percent.mito']] <- percent.mito
In [15]:
#all<- subset(x = all, subset = nCount_RNA > 700 & nCount_RNA < 20000 & percent.mito < 0.10) # this time respect authors threshold
In [41]:
# subsettting data into individual samples
su001_pre<-subset(all,cells=subset(bcc_all_metadata,patient=="su001" & treatment=="pre")$cell.id)
su001_post<-subset(all,cells=subset(bcc_all_metadata,patient=="su001" & treatment=="post")$cell.id)
su002_pre<-subset(all,cells=subset(bcc_all_metadata,patient=="su002" & treatment=="pre")$cell.id)
su002_post<-subset(all,cells=subset(bcc_all_metadata,patient=="su002" & treatment=="post")$cell.id)
su003_pre<-subset(all,cells=subset(bcc_all_metadata,patient=="su003" & treatment=="pre")$cell.id)
su003_post<-subset(all,cells=subset(bcc_all_metadata,patient=="su003" & treatment=="post")$cell.id)
su004_pre<-subset(all,cells=subset(bcc_all_metadata,patient=="su004" & treatment=="pre")$cell.id)
su004_post<-subset(all,cells=subset(bcc_all_metadata,patient=="su004" & treatment=="post")$cell.id)
su005_pre<-subset(all,cells=subset(bcc_all_metadata,patient=="su005" & treatment=="pre")$cell.id)
su005_post<-subset(all,cells=subset(bcc_all_metadata,patient=="su005" & treatment=="post")$cell.id)
su006_pre<-subset(all,cells=subset(bcc_all_metadata,patient=="su006" & treatment=="pre")$cell.id)
su006_post<-subset(all,cells=subset(bcc_all_metadata,patient=="su006" & treatment=="post")$cell.id)
su007_pre<-subset(all,cells=subset(bcc_all_metadata,patient=="su007" & treatment=="pre")$cell.id)
su007_post<-subset(all,cells=subset(bcc_all_metadata,patient=="su007" & treatment=="post")$cell.id)
su008_pre<-subset(all,cells=subset(bcc_all_metadata,patient=="su008" & treatment=="pre")$cell.id)
su008_post<-subset(all,cells=subset(bcc_all_metadata,patient=="su008" & treatment=="post")$cell.id)
su009_pre<-subset(all,cells=subset(bcc_all_metadata,patient=="su009" & treatment=="pre")$cell.id)
su009_post<-subset(all,cells=subset(bcc_all_metadata,patient=="su009" & treatment=="post")$cell.id)
su010_pre<-subset(all,cells=subset(bcc_all_metadata,patient=="su010" & treatment=="pre")$cell.id)
su010_post<-subset(all,cells=subset(bcc_all_metadata,patient=="su010" & treatment=="post")$cell.id)
su012_pre<-subset(all,cells=subset(bcc_all_metadata,patient=="su012" & treatment=="pre")$cell.id)
su012_post<-subset(all,cells=subset(bcc_all_metadata,patient=="su012" & treatment=="post")$cell.id)

Integration(Log-normalize)

In [44]:
su001_pre<- NormalizeData(object = su001_pre,verbose = FALSE) 
su001_post<- NormalizeData(object =su001_post,verbose = FALSE) 
su002_pre<- NormalizeData(object = su002_pre,verbose = FALSE) 
su002_post<- NormalizeData(object =su002_post,verbose = FALSE) 
su003_pre<- NormalizeData(object = su003_pre,verbose = FALSE) 
su003_post<- NormalizeData(object =su003_post,verbose = FALSE) 
su004_pre<- NormalizeData(object = su004_pre,verbose = FALSE) 
su004_post<- NormalizeData(object =su004_post,verbose = FALSE) 
su005_pre<- NormalizeData(object = su005_pre,verbose = FALSE) 
su005_post<- NormalizeData(object =su005_post,verbose = FALSE) 
su006_pre<- NormalizeData(object = su006_pre,verbose = FALSE) 
su006_post<- NormalizeData(object =su006_post,verbose = FALSE) 
su007_pre<- NormalizeData(object = su007_pre,verbose = FALSE) 
su007_post<- NormalizeData(object =su007_post,verbose = FALSE) 
su008_pre<- NormalizeData(object = su008_pre,verbose = FALSE) 
su008_post<- NormalizeData(object =su008_post,verbose = FALSE) 
su009_pre<- NormalizeData(object = su009_pre,verbose = FALSE) 
su009_post<- NormalizeData(object =su009_post,verbose = FALSE) 
su010_pre<- NormalizeData(object = su010_pre,verbose = FALSE) 
su010_post<- NormalizeData(object =su010_post,verbose = FALSE) 
su012_pre<- NormalizeData(object = su012_pre,verbose = FALSE) 
su012_post<- NormalizeData(object =su012_post,verbose = FALSE)
In [45]:
su001_pre<- FindVariableFeatures(object =su001_pre,selection.method = "vst", nfeatures = 2000, verbose = FALSE)
su001_post<- FindVariableFeatures(object =su001_post,selection.method = "vst", nfeatures = 2000, verbose = FALSE)
su002_pre<- FindVariableFeatures(object =su002_pre,selection.method = "vst", nfeatures = 2000, verbose = FALSE)
su002_post<- FindVariableFeatures(object =su002_post,selection.method = "vst", nfeatures = 2000, verbose = FALSE)
su003_pre<- FindVariableFeatures(object =su003_pre,selection.method = "vst", nfeatures = 2000, verbose = FALSE)
su003_post<- FindVariableFeatures(object =su003_post,selection.method = "vst", nfeatures = 2000, verbose = FALSE)
su004_pre<- FindVariableFeatures(object =su004_pre,selection.method = "vst", nfeatures = 2000, verbose = FALSE)
su004_post<- FindVariableFeatures(object =su004_post,selection.method = "vst", nfeatures = 2000, verbose = FALSE)
su005_pre<- FindVariableFeatures(object =su005_pre,selection.method = "vst", nfeatures = 2000, verbose = FALSE)
su005_post<- FindVariableFeatures(object =su005_post,selection.method = "vst", nfeatures = 2000, verbose = FALSE)
su006_pre<- FindVariableFeatures(object =su006_pre,selection.method = "vst", nfeatures = 2000, verbose = FALSE)
su006_post<- FindVariableFeatures(object =su006_post,selection.method = "vst", nfeatures = 2000, verbose = FALSE)
su007_pre<- FindVariableFeatures(object =su007_pre,selection.method = "vst", nfeatures = 2000, verbose = FALSE)
su007_post<- FindVariableFeatures(object =su007_post,selection.method = "vst", nfeatures = 2000, verbose = FALSE)
su008_pre<- FindVariableFeatures(object =su008_pre,selection.method = "vst", nfeatures = 2000, verbose = FALSE)
su008_post<- FindVariableFeatures(object =su008_post,selection.method = "vst", nfeatures = 2000, verbose = FALSE)
su009_pre<- FindVariableFeatures(object =su009_pre,selection.method = "vst", nfeatures = 2000, verbose = FALSE)
su009_post<- FindVariableFeatures(object =su009_post,selection.method = "vst", nfeatures = 2000, verbose = FALSE)
su010_pre<- FindVariableFeatures(object =su010_pre,selection.method = "vst", nfeatures = 2000, verbose = FALSE)
su010_post<- FindVariableFeatures(object =su010_post,selection.method = "vst", nfeatures = 2000, verbose = FALSE)
su012_pre<- FindVariableFeatures(object =su012_pre,selection.method = "vst", nfeatures = 2000, verbose = FALSE)
su012_post<- FindVariableFeatures(object =su012_post,selection.method = "vst", nfeatures = 2000, verbose = FALSE)
In [46]:
su.list<-objects()
su.list$su001_pre<-su001_pre
su.list$su001_post<-su001_post
su.list$su002_pre<-su002_pre
su.list$su002_post<-su002_post
su.list$su003_pre<-su003_pre
su.list$su003_post<-su003_post
su.list$su004_pre<-su004_pre
su.list$su004_post<-su004_post
su.list$su005_pre<-su005_pre
su.list$su005_post<-su005_post
su.list$su006_pre<-su006_pre
su.list$su006_post<-su006_post
su.list$su007_pre<-su007_pre
su.list$su007_post<-su007_post
su.list$su008_pre<-su008_pre
su.list$su008_post<-su008_post
su.list$su009_pre<-su009_pre
su.list$su009_post<-su009_post
su.list$su010_pre<-su010_pre
su.list$su010_post<-su010_post
su.list$su012_pre<-su012_pre
su.list$su012_post<-su012_post
Warning message in su.list$su001_pre <- su001_pre:
“Coercing LHS to a list”
In [47]:
reference.list <- su.list[c("su001_pre","su001_post","su002_pre","su002_post","su003_pre","su003_post","su004_pre","su004_post","su005_pre","su005_post","su006_pre","su006_post","su007_pre","su007_post","su008_pre","su008_post","su009_pre","su009_post","su010_pre","su010_post","su012_pre","su012_post")]
In [49]:
su.anchors <- FindIntegrationAnchors(object.list = reference.list, dims = 1:40,k.filter = 100)
Computing 2000 integration features

Scaling features for provided objects

Finding all pairwise anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 5085 anchors

Filtering anchors

	Retained 1348 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 674 anchors

Filtering anchors

	Retained 659 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 701 anchors

Filtering anchors

	Retained 640 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 1002 anchors

Filtering anchors

	Retained 859 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 1018 anchors

Filtering anchors

	Retained 868 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 628 anchors

Filtering anchors

	Retained 495 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 904 anchors

Filtering anchors

	Retained 824 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 1052 anchors

Filtering anchors

	Retained 928 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 642 anchors

Filtering anchors

	Retained 560 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 795 anchors

Filtering anchors

	Retained 633 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 2821 anchors

Filtering anchors

	Retained 1029 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 3745 anchors

Filtering anchors

	Retained 1534 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 691 anchors

Filtering anchors

	Retained 463 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 975 anchors

Filtering anchors

	Retained 507 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 1051 anchors

Filtering anchors

	Retained 714 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 2694 anchors

Filtering anchors

	Retained 1783 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 3305 anchors

Filtering anchors

	Retained 2026 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 651 anchors

Filtering anchors

	Retained 419 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 997 anchors

Filtering anchors

	Retained 612 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 899 anchors

Filtering anchors

	Retained 588 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 2259 anchors

Filtering anchors

	Retained 1105 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 2181 anchors

Filtering anchors

	Retained 1582 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 3005 anchors

Filtering anchors

	Retained 2130 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 715 anchors

Filtering anchors

	Retained 500 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 1007 anchors

Filtering anchors

	Retained 565 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 1044 anchors

Filtering anchors

	Retained 775 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 1891 anchors

Filtering anchors

	Retained 1270 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 1952 anchors

Filtering anchors

	Retained 1420 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 3850 anchors

Filtering anchors

	Retained 1959 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 7683 anchors

Filtering anchors

	Retained 3090 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 715 anchors

Filtering anchors

	Retained 321 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 1008 anchors

Filtering anchors

	Retained 429 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 1103 anchors

Filtering anchors

	Retained 645 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 2827 anchors

Filtering anchors

	Retained 1292 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 2975 anchors

Filtering anchors

	Retained 1416 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 3208 anchors

Filtering anchors

	Retained 2011 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 4606 anchors

Filtering anchors

	Retained 1914 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 9590 anchors

Filtering anchors

	Retained 4422 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 709 anchors

Filtering anchors

	Retained 296 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 1011 anchors

Filtering anchors

	Retained 387 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 1040 anchors

Filtering anchors

	Retained 463 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 3274 anchors

Filtering anchors

	Retained 979 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 3134 anchors

Filtering anchors

	Retained 1272 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 3106 anchors

Filtering anchors

	Retained 1769 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 6145 anchors

Filtering anchors

	Retained 3799 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 4646 anchors

Filtering anchors

	Retained 1592 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 12070 anchors

Filtering anchors

	Retained 3382 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 697 anchors

Filtering anchors

	Retained 260 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 1025 anchors

Filtering anchors

	Retained 333 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 1100 anchors

Filtering anchors

	Retained 499 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 3519 anchors

Filtering anchors

	Retained 1447 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 3161 anchors

Filtering anchors

	Retained 973 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 2972 anchors

Filtering anchors

	Retained 1393 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 6260 anchors

Filtering anchors

	Retained 3088 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 7810 anchors

Filtering anchors

	Retained 3574 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 4531 anchors

Filtering anchors

	Retained 1470 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 9642 anchors

Filtering anchors

	Retained 3026 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 713 anchors

Filtering anchors

	Retained 334 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 1025 anchors

Filtering anchors

	Retained 376 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 1092 anchors

Filtering anchors

	Retained 631 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 3063 anchors

Filtering anchors

	Retained 1250 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 3060 anchors

Filtering anchors

	Retained 1099 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 2984 anchors

Filtering anchors

	Retained 1597 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 6245 anchors

Filtering anchors

	Retained 3018 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 7415 anchors

Filtering anchors

	Retained 2689 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 8134 anchors

Filtering anchors

	Retained 4780 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 4104 anchors

Filtering anchors

	Retained 1728 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 7111 anchors

Filtering anchors

	Retained 2539 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 684 anchors

Filtering anchors

	Retained 348 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 1023 anchors

Filtering anchors

	Retained 470 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 1031 anchors

Filtering anchors

	Retained 750 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 2821 anchors

Filtering anchors

	Retained 1142 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 2938 anchors

Filtering anchors

	Retained 1243 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 2585 anchors

Filtering anchors

	Retained 1322 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 4988 anchors

Filtering anchors

	Retained 2495 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 5791 anchors

Filtering anchors

	Retained 2350 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 5472 anchors

Filtering anchors

	Retained 2763 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 5951 anchors

Filtering anchors

	Retained 3075 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 1169 anchors

Filtering anchors

	Retained 980 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 1217 anchors

Filtering anchors

	Retained 933 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 637 anchors

Filtering anchors

	Retained 495 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 840 anchors

Filtering anchors

	Retained 655 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 832 anchors

Filtering anchors

	Retained 654 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 1105 anchors

Filtering anchors

	Retained 805 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 1183 anchors

Filtering anchors

	Retained 932 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 1194 anchors

Filtering anchors

	Retained 961 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 1224 anchors

Filtering anchors

	Retained 1043 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 1225 anchors

Filtering anchors

	Retained 977 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 1227 anchors

Filtering anchors

	Retained 1024 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 1211 anchors

Filtering anchors

	Retained 966 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 1185 anchors

Filtering anchors

	Retained 1020 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 3911 anchors

Filtering anchors

	Retained 1830 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 8122 anchors

Filtering anchors

	Retained 3157 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 703 anchors

Filtering anchors

	Retained 389 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 1011 anchors

Filtering anchors

	Retained 412 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 1092 anchors

Filtering anchors

	Retained 705 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 3234 anchors

Filtering anchors

	Retained 1404 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 2958 anchors

Filtering anchors

	Retained 1340 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 2745 anchors

Filtering anchors

	Retained 1679 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 5271 anchors

Filtering anchors

	Retained 3308 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 6010 anchors

Filtering anchors

	Retained 2824 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 6968 anchors

Filtering anchors

	Retained 3451 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 6072 anchors

Filtering anchors

	Retained 3043 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 4788 anchors

Filtering anchors

	Retained 2113 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 1222 anchors

Filtering anchors

	Retained 478 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 4928 anchors

Filtering anchors

	Retained 1276 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 13434 anchors

Filtering anchors

	Retained 3805 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 695 anchors

Filtering anchors

	Retained 246 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 1019 anchors

Filtering anchors

	Retained 319 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 1035 anchors

Filtering anchors

	Retained 486 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 3539 anchors

Filtering anchors

	Retained 824 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 3265 anchors

Filtering anchors

	Retained 1034 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 2813 anchors

Filtering anchors

	Retained 1194 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 6542 anchors

Filtering anchors

	Retained 2344 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 8883 anchors

Filtering anchors

	Retained 2511 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 9070 anchors

Filtering anchors

	Retained 2589 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 9057 anchors

Filtering anchors

	Retained 2121 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 6898 anchors

Filtering anchors

	Retained 1847 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 1221 anchors

Filtering anchors

	Retained 390 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 6654 anchors

Filtering anchors

	Retained 2792 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 5000 anchors

Filtering anchors

	Retained 1375 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 14288 anchors

Filtering anchors

	Retained 3135 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 715 anchors

Filtering anchors

	Retained 154 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 1021 anchors

Filtering anchors

	Retained 262 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 1165 anchors

Filtering anchors

	Retained 240 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 3743 anchors

Filtering anchors

	Retained 637 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 3312 anchors

Filtering anchors

	Retained 842 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 3599 anchors

Filtering anchors

	Retained 719 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 7945 anchors

Filtering anchors

	Retained 1875 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 9359 anchors

Filtering anchors

	Retained 2020 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 11180 anchors

Filtering anchors

	Retained 2222 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 10216 anchors

Filtering anchors

	Retained 1755 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 6846 anchors

Filtering anchors

	Retained 1626 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 1242 anchors

Filtering anchors

	Retained 299 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 7572 anchors

Filtering anchors

	Retained 1921 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 11207 anchors

Filtering anchors

	Retained 2800 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 4998 anchors

Filtering anchors

	Retained 1346 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 16082 anchors

Filtering anchors

	Retained 3477 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 698 anchors

Filtering anchors

	Retained 147 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 1020 anchors

Filtering anchors

	Retained 303 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 1133 anchors

Filtering anchors

	Retained 227 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 3674 anchors

Filtering anchors

	Retained 536 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 3240 anchors

Filtering anchors

	Retained 797 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 3547 anchors

Filtering anchors

	Retained 786 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 8304 anchors

Filtering anchors

	Retained 1693 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 9979 anchors

Filtering anchors

	Retained 2369 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 11835 anchors

Filtering anchors

	Retained 2197 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 10358 anchors

Filtering anchors

	Retained 1519 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 6994 anchors

Filtering anchors

	Retained 1463 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 1216 anchors

Filtering anchors

	Retained 315 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 7600 anchors

Filtering anchors

	Retained 1992 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 12144 anchors

Filtering anchors

	Retained 2719 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 11365 anchors

Filtering anchors

	Retained 6058 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 540 anchors

Filtering anchors

	Retained 532 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 540 anchors

Filtering anchors

	Retained 527 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 493 anchors

Filtering anchors

	Retained 479 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 527 anchors

Filtering anchors

	Retained 512 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 530 anchors

Filtering anchors

	Retained 508 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 539 anchors

Filtering anchors

	Retained 527 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 540 anchors

Filtering anchors

	Retained 526 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 540 anchors

Filtering anchors

	Retained 535 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 540 anchors

Filtering anchors

	Retained 530 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 540 anchors

Filtering anchors

	Retained 517 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 540 anchors

Filtering anchors

	Retained 532 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 540 anchors

Filtering anchors

	Retained 526 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 540 anchors

Filtering anchors

	Retained 534 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 534 anchors

Filtering anchors

	Retained 529 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 540 anchors

Filtering anchors

	Retained 525 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 540 anchors

Filtering anchors

	Retained 536 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 540 anchors

Filtering anchors

	Retained 533 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 540 anchors

Filtering anchors

	Retained 528 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 2330 anchors

Filtering anchors

	Retained 1372 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 2599 anchors

Filtering anchors

	Retained 1440 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 700 anchors

Filtering anchors

	Retained 357 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 991 anchors

Filtering anchors

	Retained 568 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 1067 anchors

Filtering anchors

	Retained 524 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 2149 anchors

Filtering anchors

	Retained 934 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 2118 anchors

Filtering anchors

	Retained 1183 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 2117 anchors

Filtering anchors

	Retained 1086 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 2505 anchors

Filtering anchors

	Retained 1493 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 2554 anchors

Filtering anchors

	Retained 1514 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 2602 anchors

Filtering anchors

	Retained 1454 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 2574 anchors

Filtering anchors

	Retained 1258 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 2433 anchors

Filtering anchors

	Retained 1333 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 1164 anchors

Filtering anchors

	Retained 612 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 2486 anchors

Filtering anchors

	Retained 1623 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 2571 anchors

Filtering anchors

	Retained 1549 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 2577 anchors

Filtering anchors

	Retained 1753 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 2607 anchors

Filtering anchors

	Retained 1844 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 539 anchors

Filtering anchors

	Retained 323 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 4658 anchors

Filtering anchors

	Retained 1622 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 10603 anchors

Filtering anchors

	Retained 3196 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 705 anchors

Filtering anchors

	Retained 204 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 1001 anchors

Filtering anchors

	Retained 375 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 1128 anchors

Filtering anchors

	Retained 317 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 3620 anchors

Filtering anchors

	Retained 812 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 3180 anchors

Filtering anchors

	Retained 1038 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 3320 anchors

Filtering anchors

	Retained 906 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 6568 anchors

Filtering anchors

	Retained 2124 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 7886 anchors

Filtering anchors

	Retained 2835 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 8096 anchors

Filtering anchors

	Retained 2785 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 7439 anchors

Filtering anchors

	Retained 1980 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 5969 anchors

Filtering anchors

	Retained 1698 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 1214 anchors

Filtering anchors

	Retained 405 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 6729 anchors

Filtering anchors

	Retained 2132 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 9417 anchors

Filtering anchors

	Retained 1938 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 9235 anchors

Filtering anchors

	Retained 2756 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 9680 anchors

Filtering anchors

	Retained 3050 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 540 anchors

Filtering anchors

	Retained 180 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 2567 anchors

Filtering anchors

	Retained 795 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 3083 anchors

Filtering anchors

	Retained 1493 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 3822 anchors

Filtering anchors

	Retained 1747 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 703 anchors

Filtering anchors

	Retained 291 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 998 anchors

Filtering anchors

	Retained 518 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 1131 anchors

Filtering anchors

	Retained 418 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 2662 anchors

Filtering anchors

	Retained 1054 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 2580 anchors

Filtering anchors

	Retained 1237 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 2673 anchors

Filtering anchors

	Retained 1158 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 3564 anchors

Filtering anchors

	Retained 1611 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 3647 anchors

Filtering anchors

	Retained 1868 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 3658 anchors

Filtering anchors

	Retained 1918 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 3631 anchors

Filtering anchors

	Retained 1802 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 3382 anchors

Filtering anchors

	Retained 1542 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 1205 anchors

Filtering anchors

	Retained 580 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 3538 anchors

Filtering anchors

	Retained 1680 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 3779 anchors

Filtering anchors

	Retained 1431 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 3757 anchors

Filtering anchors

	Retained 1646 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 3812 anchors

Filtering anchors

	Retained 1811 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 540 anchors

Filtering anchors

	Retained 233 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 2236 anchors

Filtering anchors

	Retained 1044 anchors

Running CCA

Merging objects

Finding neighborhoods

Finding anchors

	Found 3540 anchors

Filtering anchors

	Retained 2276 anchors

In [50]:
bcc.integrated <- IntegrateData(anchorset = su.anchors, dims = 1:40)
Merging dataset 19 into 16

Extracting anchors for merged samples

Finding integration vectors

Finding integration vector weights

Integrating data

Merging dataset 3 into 1

Extracting anchors for merged samples

Finding integration vectors

Finding integration vector weights

Integrating data

Merging dataset 4 into 2

Extracting anchors for merged samples

Finding integration vectors

Finding integration vector weights

Integrating data

Merging dataset 14 into 9

Extracting anchors for merged samples

Finding integration vectors

Finding integration vector weights

Integrating data

Merging dataset 5 into 1 3

Extracting anchors for merged samples

Finding integration vectors

Finding integration vector weights

Integrating data

Merging dataset 20 into 18

Extracting anchors for merged samples

Finding integration vectors

Finding integration vector weights

Integrating data

Merging dataset 22 into 21

Extracting anchors for merged samples

Finding integration vectors

Finding integration vector weights

Integrating data

Merging dataset 7 into 2 4

Extracting anchors for merged samples

Finding integration vectors

Finding integration vector weights

Integrating data

Merging dataset 8 into 9 14

Extracting anchors for merged samples

Finding integration vectors

Finding integration vector weights

Integrating data

Merging dataset 6 into 11

Extracting anchors for merged samples

Finding integration vectors

Finding integration vector weights

Integrating data

Merging dataset 1 3 5 into 9 14 8

Extracting anchors for merged samples

Finding integration vectors

Finding integration vector weights

Integrating data

Merging dataset 13 into 12

Extracting anchors for merged samples

Finding integration vectors

Finding integration vector weights

Integrating data

Merging dataset 17 into 18 20

Extracting anchors for merged samples

Finding integration vectors

Finding integration vector weights

Integrating data

Merging dataset 10 into 9 14 8 1 3 5

Extracting anchors for merged samples

Finding integration vectors

Finding integration vector weights

Integrating data

Merging dataset 15 into 11 6

Extracting anchors for merged samples

Finding integration vectors

Finding integration vector weights

Integrating data

Merging dataset 21 22 into 2 4 7

Extracting anchors for merged samples

Finding integration vectors

Finding integration vector weights

Integrating data

Merging dataset 12 13 into 11 6 15

Extracting anchors for merged samples

Finding integration vectors

Finding integration vector weights

Integrating data

Merging dataset 9 14 8 1 3 5 10 into 2 4 7 21 22

Extracting anchors for merged samples

Finding integration vectors

Finding integration vector weights

Integrating data

Merging dataset 16 19 into 2 4 7 21 22 9 14 8 1 3 5 10

Extracting anchors for merged samples

Finding integration vectors

Finding integration vector weights

Integrating data

Merging dataset 18 20 17 into 2 4 7 21 22 9 14 8 1 3 5 10 16 19

Extracting anchors for merged samples

Finding integration vectors

Finding integration vector weights

Integrating data

Merging dataset 11 6 15 12 13 into 2 4 7 21 22 9 14 8 1 3 5 10 16 19 18 20 17

Extracting anchors for merged samples

Finding integration vectors

Finding integration vector weights

Integrating data

Warning message:
“Adding a command log without an assay associated with it”
In [51]:
library(cowplot)
# switch to integrated assay. The variable features of this assay are
# automatically set during IntegrateData
DefaultAssay(object = bcc.integrated) <- "integrated"

# Run the standard workflow for visualization and clustering
bcc.integrated <- ScaleData(object = bcc.integrated, verbose = FALSE)
bcc.integrated <- RunPCA(object = bcc.integrated, npcs = 40, verbose = FALSE)
bcc.integrated <- RunUMAP(object = bcc.integrated, reduction = "pca", 
    dims = 1:40)
Warning message:
“The default method for RunUMAP has changed from calling Python UMAP via reticulate to the R-native UWOT using the cosine metric
To use Python UMAP via reticulate, set umap.method to 'umap-learn' and metric to 'correlation'
This message will be shown once per session”
23:13:15 UMAP embedding parameters a = 0.9922 b = 1.112

23:13:15 Read 53029 rows and found 40 numeric columns

23:13:15 Using Annoy for neighbor search, n_neighbors = 30

23:13:15 Building Annoy index with metric = cosine, n_trees = 50

0%   10   20   30   40   50   60   70   80   90   100%

[----|----|----|----|----|----|----|----|----|----|

*
*
*
*
*
*
*
*
*
*
*
*
*
*
*
*
*
*
*
*
*
*
*
*
*
*
*
*
*
*
*
*
*
*
*
*
*
*
*
*
*
*
*
*
*
*
*
*
*
*
|

23:13:21 Writing NN index file to temp file /tmp/RtmppibU3g/file24f0696f0c54

23:13:21 Searching Annoy index using 1 thread, search_k = 3000

23:13:36 Annoy recall = 100%

23:13:36 Commencing smooth kNN distance calibration using 1 thread

23:13:38 Initializing from normalized Laplacian + noise

23:13:40 Commencing optimization for 200 epochs, with 2660696 positive edges

23:14:01 Optimization finished

In [64]:
stim<-numeric()
for(i in 1:dim(bcc.integrated@meta.data)[1]){
    temp<-subset(bcc_all_metadata,cell.id==rownames(bcc.integrated@meta.data)[i])
    stim<-c(stim,paste(temp$patient,"_",temp$treatment,sep=""))
}
bcc.integrated@meta.data$stim<-stim
In [68]:
treatment<-numeric()
for(i in 1:dim(bcc.integrated@meta.data)[1]){
    temp<-subset(bcc_all_metadata,cell.id==rownames(bcc.integrated@meta.data)[i])
  treatment<-c(treatment,temp$treatment)
}
bcc.integrated@meta.data$treatment<-treatment
In [69]:
patient<-numeric()
for(i in 1:dim(bcc.integrated@meta.data)[1]){
    temp<-subset(bcc_all_metadata,cell.id==rownames(bcc.integrated@meta.data)[i])
  patient<-c(patient,temp$patient)
}
bcc.integrated@meta.data$patient<-patient
In [123]:
sort<-numeric()
for(i in 1:dim(bcc.integrated@meta.data)[1]){
    temp<-subset(bcc_all_metadata,cell.id==rownames(bcc.integrated@meta.data)[i])
  sort<-c(sort,temp$sort)
}
bcc.integrated@meta.data$sort<-sort
In [127]:
original_cluster<-numeric()
for(i in 1:dim(bcc.integrated@meta.data)[1]){
    temp<-subset(bcc_all_metadata,cell.id==rownames(bcc.integrated@meta.data)[i])
  original_cluster<-c(original_cluster,temp$cluster)
}
bcc.integrated@meta.data$original_cluster<-original_cluster
In [70]:
p1 <- DimPlot(object = bcc.integrated, reduction = "umap", group.by = "stim", label = TRUE, repel = TRUE)
plot_grid(p1,label_size = 30)
ggsave(file="/media/garret/New Volume/scRNAseq_data/Personalis/all_cell_umap_stim.pdf",width=10,height=10)
Warning message:
“ggrepel: 14 unlabeled data points (too many overlaps). Consider increasing max.overlaps”
Warning message:
“ggrepel: 13 unlabeled data points (too many overlaps). Consider increasing max.overlaps”
In [71]:
p1 <- DimPlot(object = bcc.integrated, reduction = "umap", group.by = "treatment", label = TRUE, repel = TRUE)
plot_grid(p1,label_size = 30)
ggsave(file="/media/garret/New Volume/scRNAseq_data/Personalis/all_cell_umap_treatment.pdf",width=10,height=10)
In [72]:
p1 <- DimPlot(object = bcc.integrated, reduction = "umap", group.by = "patient", label = TRUE, repel = TRUE)
plot_grid(p1,label_size = 30)
ggsave(file="/media/garret/New Volume/scRNAseq_data/Personalis/all_cell_umap_patient.pdf",width=10,height=10)
Warning message:
“ggrepel: 5 unlabeled data points (too many overlaps). Consider increasing max.overlaps”
In [124]:
p1 <- DimPlot(object = bcc.integrated, reduction = "umap", group.by = "sort", label = TRUE, repel = TRUE)
plot_grid(p1,label_size = 30)
ggsave(file="/media/garret/New Volume/scRNAseq_data/Personalis/all_cell_umap_sort.pdf",width=10,height=10)

integrated analysis

In [81]:
#used default setting
DefaultAssay(object = bcc.integrated) <- "integrated"
bcc.integrated <- FindNeighbors(object = bcc.integrated)
bcc.integrated <- FindClusters(bcc.integrated, resolution = 0.6)
Computing nearest neighbor graph

Computing SNN

Modularity Optimizer version 1.3.0 by Ludo Waltman and Nees Jan van Eck

Number of nodes: 53029
Number of edges: 1773632

Running Louvain algorithm...
Maximum modularity in 10 random starts: 0.9183
Number of communities: 21
Elapsed time: 10 seconds
In [56]:
library(ggplot2)
In [82]:
DimPlot(object = bcc.integrated, reduction = "umap", group.by = "integrated_snn_res.0.6", label = TRUE, repel = TRUE) 
ggsave(file="/media/garret/New Volume/scRNAseq_data/Personalis/allcell_umap_number_0.6.pdf",width=10,height=10)
In [83]:
# this is important
DefaultAssay(bcc.integrated) <- "RNA"
In [125]:
saveRDS(bcc.integrated, file = "/media/garret/New Volume/scRNAseq_data/Personalis/bcc.integrated.rds")

Visualizing gene expression in UMAP space

In [101]:
#T cells
FeaturePlot(object =bcc.integrated, features = c("CD3G","CD3D","CD3E","CD2"), cols = c("lightgrey", "blue"))
ggsave(file="/media/garret/New Volume/scRNAseq_data/Personalis/bcc_UMAP_feature_CD3G_CD3D_CD3E_CD2.pdf",width=10,height=10)
In [102]:
#CD8 T cells
FeaturePlot(object =bcc.integrated, features = c("CD8A","GZMA"), cols = c("lightgrey", "blue"))
ggsave(file="/media/garret/New Volume/scRNAseq_data/Personalis/bcc_UMAP_feature_CD8A_GZMA.pdf",width=10,height=10)
In [118]:
#CD8 T cells
FeaturePlot(object =bcc.integrated, features = c("CD45","CD3"), cols = c("lightgrey", "blue"))
ggsave(file="/media/garret/New Volume/scRNAseq_data/Personalis/bcc_UMAP_feature_CD45_CD3.pdf",width=10,height=10)
Warning message in FetchData(object = object, vars = c(dims, "ident", features), :
“The following requested variables were not found: CD45, CD3”
Error: None of the requested features were found: CD45, CD3 in slot data
Traceback:

1. FeaturePlot(object = bcc.integrated, features = c("CD45", "CD3"), 
 .     cols = c("lightgrey", "blue"))
2. stop("None of the requested features were found: ", paste(features, 
 .     collapse = ", "), " in slot ", slot, call. = FALSE)
In [103]:
#CD4 T cells
FeaturePlot(object =bcc.integrated, features = c("CD4","FOXP3"), cols = c("lightgrey", "blue"))
ggsave(file="/media/garret/New Volume/scRNAseq_data/Personalis/bcc_UMAP_feature_CD4_FOXP3.pdf",width=10,height=10)
In [104]:
#NKcells
FeaturePlot(object =bcc.integrated, features = c("KLRC1","KLRC3"), cols = c("lightgrey", "blue"))
ggsave(file="/media/garret/New Volume/scRNAseq_data/Personalis/bcc_UMAP_feature_KLRC1_KLRC3.pdf",width=10,height=10)
In [105]:
#B cells
FeaturePlot(object =bcc.integrated, features = c("CD19","CD79A"), cols = c("lightgrey", "blue"))
ggsave(file="/media/garret/New Volume/scRNAseq_data/Personalis/bcc_UMAP_feature_CD19_CD79A.pdf",width=10,height=10)
In [106]:
#plasma cells
FeaturePlot(object =bcc.integrated, features = c("SLAMF7","IGKC"), cols = c("lightgrey", "blue"))
ggsave(file="/media/garret/New Volume/scRNAseq_data/Personalis/bcc_UMAP_feature_SLAMF7_IGKC.pdf",width=10,height=10)
In [107]:
#macrophages
FeaturePlot(object =bcc.integrated, features = c("FCGR2A","CSF1R"), cols = c("lightgrey", "blue"))
ggsave(file="/media/garret/New Volume/scRNAseq_data/Personalis/bcc_UMAP_feature_FCGR2A_CSF1R.pdf",width=10,height=10)
In [108]:
#dendtiric cells
FeaturePlot(object =bcc.integrated, features = c("FLT3"), cols = c("lightgrey", "blue"))
ggsave(file="/media/garret/New Volume/scRNAseq_data/Personalis/bcc_UMAP_feature_FLT3.pdf",width=10,height=10)
In [109]:
#plasmacytoid dendritic cells
FeaturePlot(object =bcc.integrated, features = c("CLEC4C"), cols = c("lightgrey", "blue"))
ggsave(file="/media/garret/New Volume/scRNAseq_data/Personalis/bcc_UMAP_feature_CLE4C.pdf",width=10,height=10)
In [110]:
#fibroblasts
FeaturePlot(object =bcc.integrated, features = c("COL1A2"), cols = c("lightgrey", "blue"))
ggsave(file="/media/garret/New Volume/scRNAseq_data/Personalis/bcc_UMAP_feature_COL1A2.pdf",width=10,height=10)
In [111]:
#myofibroblasts
FeaturePlot(object =bcc.integrated, features = c("MCAM","MYLK"), cols = c("lightgrey", "blue"))
ggsave(file="/media/garret/New Volume/scRNAseq_data/Personalis/bcc_UMAP_feature_MCAM_MYLK.pdf",width=10,height=10)
In [112]:
#cancer-associated fibroblast
FeaturePlot(object =bcc.integrated, features = c("FAP","PDPN"), cols = c("lightgrey", "blue"))
ggsave(file="/media/garret/New Volume/scRNAseq_data/Personalis/bcc_UMAP_feature_FAP_PDPN.pdf",width=10,height=10)
In [113]:
#malignast cells
FeaturePlot(object =bcc.integrated, features = c("EPCAM","TP63"), cols = c("lightgrey", "blue"))
ggsave(file="/media/garret/New Volume/scRNAseq_data/Personalis/bcc_UMAP_feature_EPCAM_TP63.pdf",width=10,height=10)
In [114]:
#endothelial cells
FeaturePlot(object =bcc.integrated, features = c("PECAM1","VWF"), cols = c("lightgrey", "blue"))
ggsave(file="/media/garret/New Volume/scRNAseq_data/Personalis/bcc_UMAP_feature_PECAM1_VWF.pdf",width=10,height=10)
In [115]:
#melanocytes
FeaturePlot(object =bcc.integrated, features = c("PMEL","MLANA"), cols = c("lightgrey", "blue"))
ggsave(file="/media/garret/New Volume/scRNAseq_data/Personalis/bcc_UMAP_feature_PMEL_MLANA.pdf",width=10,height=10)

Upload seurat object. You can start from here

In [3]:
# res 0.6
bcc.integrated<-readRDS(file =  "/media/garret/New Volume/scRNAseq_data/Personalis/bcc.integrated.rds")
# this is important
DefaultAssay(bcc.integrated) <- "RNA"

assgin clusters to cell types

In [4]:
new.ident <- c("Bcell","CD4_Tcell1","CD8_Tcell1","CD8_Tcell2","CD4_Tcell2",
               "CD4_Tcell3","Malignant_cell","Plasma_cell","CD4_Tcell4","NK_cell",
               "CD4_Tcell5","Dendritic_cell","CD8_Tcell3","Macrophage","CD8_Tcell4",
               "CD8_Tcell5","CD8_Tcell6","Fibroblast","Plasmacytoid_dendritic_cell","Endotherial_cell",
               "Myofibroblast")
names(x = new.ident) <- levels(x =bcc.integrated)
bcc.integrated<- RenameIdents(object =bcc.integrated, new.ident)
In [133]:
DimPlot(object = bcc.integrated, reduction = "umap", label.size =4, label = TRUE, repel = TRUE) 
ggsave(file="/media/garret/New Volume/scRNAseq_data/Personalis/allcell_umap_name.pdf",width=15,height=10)
In [131]:
# comparision with my original cluster
p1 <- DimPlot(object = bcc.integrated, reduction = "umap", group.by = "original_cluster", label = TRUE, repel = TRUE)
plot_grid(p1,label_size = 30)
ggsave(file="/media/garret/New Volume/scRNAseq_data/Personalis/all_cell_umap_original_cluster.pdf",width=10,height=10)
In [5]:
for (i in 1:length(new.ident)){
assign(paste(new.ident[i],"_barcode",sep=""),colnames(bcc.integrated@assays$RNA@data[,which(Idents(object=bcc.integrated) %in% new.ident[i])]))# this gives all barcodes in cluster
}
In [135]:
T_barcode<-c(CD4_Tcell1_barcode,CD4_Tcell2_barcode,CD4_Tcell3_barcode,CD4_Tcell4_barcode,CD4_Tcell5_barcode,CD8_Tcell1_barcode,CD8_Tcell2_barcode,CD8_Tcell3_barcode,CD8_Tcell4_barcode,CD8_Tcell5_barcode)
In [136]:
saveRDS(T_barcode, file = "/media/garret/New Volume/scRNAseq_data/Personalis/T_id.rds")

conserved markers for clusters

In [6]:
DefaultAssay(bcc.integrated) <- "integrated"
In [7]:
for (i in 1:length(new.ident)){
one.markers <- FindConservedMarkers(bcc.integrated, ident.1 = new.ident[i], grouping.var = "stim",print.bar = FALSE, min.cells.feature = 1,min.cells.group = 1)
write.xlsx2(one.markers,file=(paste("/media/garret/New Volume/scRNAseq_data/Personalis/Marker/",new.ident[i],"_gene.xlsx",sep="")))}
Warning message:
“Identity: Bcell not present in group su010_pre. Skipping su010_pre”
Warning message:
“Identity: Bcell not present in group su002_pre. Skipping su002_pre”
Testing group su002_post: (Bcell) vs (CD8_Tcell4, CD4_Tcell2, CD4_Tcell1, CD8_Tcell1, CD8_Tcell3, CD4_Tcell3, CD8_Tcell2, CD4_Tcell4, CD4_Tcell5, CD8_Tcell6, Plasma_cell, Fibroblast, NK_cell, Dendritic_cell, Endotherial_cell, Macrophage, Myofibroblast, Plasmacytoid_dendritic_cell)

Warning message:
“Identity: Bcell not present in group su003_pre. Skipping su003_pre”
Testing group su007_post: (Bcell) vs (Dendritic_cell, CD8_Tcell1, CD8_Tcell2, CD4_Tcell5, CD4_Tcell1, CD4_Tcell3, CD8_Tcell4, CD4_Tcell4, Myofibroblast, Malignant_cell, CD8_Tcell3, Plasma_cell, NK_cell, Endotherial_cell, CD8_Tcell6, CD4_Tcell2, Macrophage, Fibroblast, CD8_Tcell5)

Warning message:
“Identity: Bcell not present in group su010_post. Skipping su010_post”
Testing group su004_pre: (Bcell) vs (CD8_Tcell2, CD8_Tcell3, CD4_Tcell4, CD4_Tcell5, CD4_Tcell3, CD8_Tcell1, CD4_Tcell1, CD4_Tcell2, CD8_Tcell4, NK_cell, CD8_Tcell6, Dendritic_cell, Macrophage, Fibroblast, Endotherial_cell, Malignant_cell, Plasmacytoid_dendritic_cell, Myofibroblast, Plasma_cell)

Testing group su012_post: (Bcell) vs (CD8_Tcell4, CD8_Tcell5, CD4_Tcell1, CD8_Tcell1, CD8_Tcell6, CD4_Tcell2, CD4_Tcell4, CD8_Tcell2, Macrophage, Malignant_cell, CD8_Tcell3, CD4_Tcell3, CD4_Tcell5, Fibroblast, Plasma_cell, NK_cell, Plasmacytoid_dendritic_cell, Dendritic_cell)

Testing group su004_post: (Bcell) vs (CD8_Tcell2, CD4_Tcell4, CD4_Tcell5, CD4_Tcell1, CD4_Tcell2, Macrophage, CD4_Tcell3, CD8_Tcell1, CD8_Tcell3, CD8_Tcell6, NK_cell, CD8_Tcell5, CD8_Tcell4, Dendritic_cell, Fibroblast, Plasmacytoid_dendritic_cell, Malignant_cell, Myofibroblast, Plasma_cell, Endotherial_cell)

Testing group su003_post: (Bcell) vs (Malignant_cell, Dendritic_cell, Fibroblast, CD4_Tcell1, Myofibroblast, Macrophage, CD8_Tcell4, CD4_Tcell2, CD8_Tcell6, Plasmacytoid_dendritic_cell, CD8_Tcell5, NK_cell, Endotherial_cell, CD8_Tcell3, CD4_Tcell4, CD8_Tcell1, CD8_Tcell2, CD4_Tcell3, CD4_Tcell5, Plasma_cell)

Testing group su001_pre: (Bcell) vs (Malignant_cell, CD4_Tcell5, Dendritic_cell, NK_cell, CD4_Tcell1, Macrophage, Endotherial_cell, CD4_Tcell2, Fibroblast, CD8_Tcell3, CD8_Tcell1, CD4_Tcell4, CD4_Tcell3, CD8_Tcell4, CD8_Tcell6, Plasmacytoid_dendritic_cell, CD8_Tcell2, Plasma_cell, Myofibroblast, CD8_Tcell5)

Testing group su007_pre: (Bcell) vs (CD4_Tcell1, CD8_Tcell2, CD4_Tcell3, CD4_Tcell4, CD8_Tcell1, CD8_Tcell4, CD4_Tcell5, CD8_Tcell3, CD4_Tcell2, NK_cell, CD8_Tcell5, CD8_Tcell6, Macrophage, Malignant_cell, Dendritic_cell, Plasma_cell, Plasmacytoid_dendritic_cell, Fibroblast, Myofibroblast, Endotherial_cell)

Testing group su008_pre: (Bcell) vs (Plasmacytoid_dendritic_cell, Plasma_cell, Dendritic_cell, Malignant_cell, NK_cell, Macrophage, CD8_Tcell3, CD8_Tcell5, CD8_Tcell4, CD4_Tcell1, Fibroblast, Myofibroblast, CD8_Tcell1, CD8_Tcell2, CD4_Tcell5, CD8_Tcell6, CD4_Tcell2, CD4_Tcell3, CD4_Tcell4, Endotherial_cell)

Testing group su012_pre: (Bcell) vs (CD4_Tcell1, Malignant_cell, CD4_Tcell4, Macrophage, CD4_Tcell3, CD8_Tcell4, CD8_Tcell1, CD4_Tcell5, NK_cell, CD4_Tcell2, Plasma_cell, CD8_Tcell5, Fibroblast, CD8_Tcell2, CD8_Tcell3, CD8_Tcell6, Dendritic_cell, Plasmacytoid_dendritic_cell)

Testing group su005_pre: (Bcell) vs (Macrophage, CD8_Tcell5, CD4_Tcell1, Dendritic_cell, CD8_Tcell4, Plasmacytoid_dendritic_cell, NK_cell, Malignant_cell, Plasma_cell, CD4_Tcell3, CD8_Tcell2, CD4_Tcell4, CD8_Tcell3, Fibroblast, CD8_Tcell6, CD8_Tcell1, CD4_Tcell2, CD4_Tcell5, Endotherial_cell, Myofibroblast)

Testing group su005_post: (Bcell) vs (CD4_Tcell1, CD8_Tcell3, CD8_Tcell6, CD4_Tcell5, CD4_Tcell4, CD8_Tcell2, CD4_Tcell3, CD8_Tcell1, CD8_Tcell4, NK_cell, CD4_Tcell2, CD8_Tcell5, Dendritic_cell, Macrophage, Plasma_cell, Fibroblast, Plasmacytoid_dendritic_cell, Myofibroblast, Endotherial_cell, Malignant_cell)

Testing group su006_post: (Bcell) vs (Macrophage, Plasma_cell, Dendritic_cell, CD8_Tcell5, Plasmacytoid_dendritic_cell, CD8_Tcell6, CD8_Tcell4, Fibroblast, NK_cell, CD4_Tcell1, CD8_Tcell3, CD4_Tcell2, CD8_Tcell2, CD8_Tcell1, CD4_Tcell3, CD4_Tcell4, CD4_Tcell5, Malignant_cell, Myofibroblast, Endotherial_cell)

Testing group su009_pre: (Bcell) vs (CD8_Tcell1, CD4_Tcell2, CD8_Tcell5, CD8_Tcell6, CD4_Tcell3, Malignant_cell, CD8_Tcell2, CD8_Tcell3, Dendritic_cell, CD4_Tcell4, CD4_Tcell1, NK_cell, CD4_Tcell5, Fibroblast, CD8_Tcell4, Plasmacytoid_dendritic_cell, Macrophage, Plasma_cell, Myofibroblast)

Testing group su009_post: (Bcell) vs (CD8_Tcell1, CD8_Tcell2, NK_cell, CD8_Tcell5, CD4_Tcell1, CD8_Tcell3, CD4_Tcell3, CD4_Tcell5, Malignant_cell, CD4_Tcell2, CD8_Tcell4, CD4_Tcell4, CD8_Tcell6, Fibroblast, Macrophage, Dendritic_cell, Plasma_cell, Plasmacytoid_dendritic_cell, Myofibroblast)

Testing group su008_post: (Bcell) vs (CD8_Tcell2, CD4_Tcell3, CD4_Tcell1, NK_cell, CD8_Tcell1, CD8_Tcell3, CD8_Tcell5, CD8_Tcell4, CD4_Tcell2, CD4_Tcell5, CD8_Tcell6, CD4_Tcell4, Fibroblast, Macrophage, Malignant_cell, Plasma_cell, Dendritic_cell, Plasmacytoid_dendritic_cell, Endotherial_cell, Myofibroblast)

Testing group su006_pre: (Bcell) vs (Plasma_cell, Macrophage, CD8_Tcell5, CD4_Tcell1, Dendritic_cell, CD8_Tcell4, Plasmacytoid_dendritic_cell, Fibroblast, CD8_Tcell6, CD8_Tcell2, NK_cell, CD8_Tcell3, CD4_Tcell3, CD8_Tcell1, CD4_Tcell2, CD4_Tcell4, CD4_Tcell5, Endotherial_cell, Malignant_cell, Myofibroblast)

Testing group su001_post: (Bcell) vs (CD8_Tcell1, CD4_Tcell2, CD8_Tcell3, CD4_Tcell3, CD4_Tcell5, CD4_Tcell4, CD8_Tcell6, CD8_Tcell2, NK_cell, CD4_Tcell1, CD8_Tcell4, Macrophage, Dendritic_cell, Plasmacytoid_dendritic_cell, Plasma_cell, Fibroblast, Endotherial_cell, Myofibroblast, CD8_Tcell5, Malignant_cell)

Testing group su010_pre: (CD4_Tcell1) vs (CD8_Tcell2, CD4_Tcell3, Malignant_cell, NK_cell, Fibroblast, CD4_Tcell5, CD4_Tcell2, CD8_Tcell5, Plasma_cell, CD8_Tcell3, CD8_Tcell4, Dendritic_cell, CD8_Tcell6, Macrophage)

Testing group su002_pre: (CD4_Tcell1) vs (Macrophage, Dendritic_cell, NK_cell, Malignant_cell, CD8_Tcell2, CD8_Tcell6, CD4_Tcell4, CD4_Tcell5, Fibroblast, Myofibroblast, Plasma_cell, CD8_Tcell4, CD4_Tcell3, CD4_Tcell2, CD8_Tcell3, CD8_Tcell1, CD8_Tcell5, Endotherial_cell)

Testing group su002_post: (CD4_Tcell1) vs (CD8_Tcell4, CD4_Tcell2, CD8_Tcell1, CD8_Tcell3, CD4_Tcell3, CD8_Tcell2, CD4_Tcell4, Bcell, CD4_Tcell5, CD8_Tcell6, Plasma_cell, Fibroblast, NK_cell, Dendritic_cell, Endotherial_cell, Macrophage, Myofibroblast, Plasmacytoid_dendritic_cell)

Testing group su003_pre: (CD4_Tcell1) vs (CD8_Tcell2, CD4_Tcell2, CD8_Tcell4, Fibroblast, Malignant_cell, CD4_Tcell4, Macrophage, CD4_Tcell3, Myofibroblast, CD8_Tcell1, NK_cell, Plasmacytoid_dendritic_cell, Dendritic_cell, CD8_Tcell6, Endotherial_cell, Plasma_cell, CD8_Tcell3, CD4_Tcell5, CD8_Tcell5)

Testing group su007_post: (CD4_Tcell1) vs (Dendritic_cell, CD8_Tcell1, Bcell, CD8_Tcell2, CD4_Tcell5, CD4_Tcell3, CD8_Tcell4, CD4_Tcell4, Myofibroblast, Malignant_cell, CD8_Tcell3, Plasma_cell, NK_cell, Endotherial_cell, CD8_Tcell6, CD4_Tcell2, Macrophage, Fibroblast, CD8_Tcell5)

Testing group su010_post: (CD4_Tcell1) vs (CD4_Tcell2, Malignant_cell, CD8_Tcell5, CD8_Tcell2, CD8_Tcell3, Macrophage, CD4_Tcell5, CD4_Tcell4, CD8_Tcell1, NK_cell, Dendritic_cell, Fibroblast, CD4_Tcell3, CD8_Tcell6, CD8_Tcell4, Plasma_cell, Plasmacytoid_dendritic_cell)

Testing group su004_pre: (CD4_Tcell1) vs (CD8_Tcell2, CD8_Tcell3, CD4_Tcell4, CD4_Tcell5, CD4_Tcell3, CD8_Tcell1, CD4_Tcell2, CD8_Tcell4, Bcell, NK_cell, CD8_Tcell6, Dendritic_cell, Macrophage, Fibroblast, Endotherial_cell, Malignant_cell, Plasmacytoid_dendritic_cell, Myofibroblast, Plasma_cell)

Testing group su012_post: (CD4_Tcell1) vs (CD8_Tcell4, CD8_Tcell5, CD8_Tcell1, CD8_Tcell6, CD4_Tcell2, CD4_Tcell4, CD8_Tcell2, Macrophage, Malignant_cell, CD8_Tcell3, CD4_Tcell3, CD4_Tcell5, Bcell, Fibroblast, Plasma_cell, NK_cell, Plasmacytoid_dendritic_cell, Dendritic_cell)

Testing group su004_post: (CD4_Tcell1) vs (CD8_Tcell2, CD4_Tcell4, CD4_Tcell5, CD4_Tcell2, Macrophage, CD4_Tcell3, CD8_Tcell1, CD8_Tcell3, CD8_Tcell6, NK_cell, CD8_Tcell5, CD8_Tcell4, Dendritic_cell, Fibroblast, Plasmacytoid_dendritic_cell, Malignant_cell, Bcell, Myofibroblast, Plasma_cell, Endotherial_cell)

Testing group su003_post: (CD4_Tcell1) vs (Malignant_cell, Dendritic_cell, Fibroblast, Myofibroblast, Macrophage, CD8_Tcell4, CD4_Tcell2, CD8_Tcell6, Plasmacytoid_dendritic_cell, CD8_Tcell5, NK_cell, Endotherial_cell, CD8_Tcell3, CD4_Tcell4, CD8_Tcell1, CD8_Tcell2, Bcell, CD4_Tcell3, CD4_Tcell5, Plasma_cell)

Testing group su001_pre: (CD4_Tcell1) vs (Malignant_cell, CD4_Tcell5, Dendritic_cell, NK_cell, Macrophage, Endotherial_cell, CD4_Tcell2, Fibroblast, CD8_Tcell3, CD8_Tcell1, CD4_Tcell4, CD4_Tcell3, CD8_Tcell4, CD8_Tcell6, Plasmacytoid_dendritic_cell, CD8_Tcell2, Plasma_cell, Myofibroblast, CD8_Tcell5, Bcell)

Testing group su007_pre: (CD4_Tcell1) vs (CD8_Tcell2, CD4_Tcell3, CD4_Tcell4, CD8_Tcell1, CD8_Tcell4, CD4_Tcell5, CD8_Tcell3, CD4_Tcell2, NK_cell, CD8_Tcell5, CD8_Tcell6, Macrophage, Malignant_cell, Dendritic_cell, Plasma_cell, Plasmacytoid_dendritic_cell, Fibroblast, Myofibroblast, Endotherial_cell, Bcell)

Testing group su008_pre: (CD4_Tcell1) vs (Plasmacytoid_dendritic_cell, Plasma_cell, Dendritic_cell, Malignant_cell, Bcell, NK_cell, Macrophage, CD8_Tcell3, CD8_Tcell5, CD8_Tcell4, Fibroblast, Myofibroblast, CD8_Tcell1, CD8_Tcell2, CD4_Tcell5, CD8_Tcell6, CD4_Tcell2, CD4_Tcell3, CD4_Tcell4, Endotherial_cell)

Testing group su012_pre: (CD4_Tcell1) vs (Malignant_cell, CD4_Tcell4, Macrophage, CD4_Tcell3, CD8_Tcell4, CD8_Tcell1, CD4_Tcell5, NK_cell, Bcell, CD4_Tcell2, Plasma_cell, CD8_Tcell5, Fibroblast, CD8_Tcell2, CD8_Tcell3, CD8_Tcell6, Dendritic_cell, Plasmacytoid_dendritic_cell)

Testing group su005_pre: (CD4_Tcell1) vs (Macrophage, CD8_Tcell5, Dendritic_cell, CD8_Tcell4, Plasmacytoid_dendritic_cell, NK_cell, Malignant_cell, Plasma_cell, CD4_Tcell3, CD8_Tcell2, Bcell, CD4_Tcell4, CD8_Tcell3, Fibroblast, CD8_Tcell6, CD8_Tcell1, CD4_Tcell2, CD4_Tcell5, Endotherial_cell, Myofibroblast)

Testing group su005_post: (CD4_Tcell1) vs (CD8_Tcell3, CD8_Tcell6, CD4_Tcell5, CD4_Tcell4, CD8_Tcell2, CD4_Tcell3, CD8_Tcell1, CD8_Tcell4, NK_cell, CD4_Tcell2, CD8_Tcell5, Dendritic_cell, Bcell, Macrophage, Plasma_cell, Fibroblast, Plasmacytoid_dendritic_cell, Myofibroblast, Endotherial_cell, Malignant_cell)

Testing group su006_post: (CD4_Tcell1) vs (Macrophage, Plasma_cell, Dendritic_cell, CD8_Tcell5, Plasmacytoid_dendritic_cell, CD8_Tcell6, CD8_Tcell4, Bcell, Fibroblast, NK_cell, CD8_Tcell3, CD4_Tcell2, CD8_Tcell2, CD8_Tcell1, CD4_Tcell3, CD4_Tcell4, CD4_Tcell5, Malignant_cell, Myofibroblast, Endotherial_cell)

Testing group su009_pre: (CD4_Tcell1) vs (CD8_Tcell1, CD4_Tcell2, CD8_Tcell5, CD8_Tcell6, CD4_Tcell3, Malignant_cell, CD8_Tcell2, CD8_Tcell3, Dendritic_cell, CD4_Tcell4, NK_cell, CD4_Tcell5, Fibroblast, CD8_Tcell4, Plasmacytoid_dendritic_cell, Macrophage, Plasma_cell, Bcell, Myofibroblast)

Testing group su009_post: (CD4_Tcell1) vs (CD8_Tcell1, CD8_Tcell2, NK_cell, CD8_Tcell5, CD8_Tcell3, CD4_Tcell3, CD4_Tcell5, Malignant_cell, CD4_Tcell2, CD8_Tcell4, CD4_Tcell4, CD8_Tcell6, Fibroblast, Macrophage, Dendritic_cell, Plasma_cell, Bcell, Plasmacytoid_dendritic_cell, Myofibroblast)

Testing group su008_post: (CD4_Tcell1) vs (CD8_Tcell2, CD4_Tcell3, NK_cell, CD8_Tcell1, CD8_Tcell3, CD8_Tcell5, CD8_Tcell4, CD4_Tcell2, CD4_Tcell5, CD8_Tcell6, CD4_Tcell4, Fibroblast, Macrophage, Malignant_cell, Plasma_cell, Dendritic_cell, Plasmacytoid_dendritic_cell, Bcell, Endotherial_cell, Myofibroblast)

Testing group su006_pre: (CD4_Tcell1) vs (Plasma_cell, Macrophage, CD8_Tcell5, Bcell, Dendritic_cell, CD8_Tcell4, Plasmacytoid_dendritic_cell, Fibroblast, CD8_Tcell6, CD8_Tcell2, NK_cell, CD8_Tcell3, CD4_Tcell3, CD8_Tcell1, CD4_Tcell2, CD4_Tcell4, CD4_Tcell5, Endotherial_cell, Malignant_cell, Myofibroblast)

Testing group su001_post: (CD4_Tcell1) vs (CD8_Tcell1, CD4_Tcell2, CD8_Tcell3, CD4_Tcell3, CD4_Tcell5, CD4_Tcell4, CD8_Tcell6, CD8_Tcell2, NK_cell, Bcell, CD8_Tcell4, Macrophage, Dendritic_cell, Plasmacytoid_dendritic_cell, Plasma_cell, Fibroblast, Endotherial_cell, Myofibroblast, CD8_Tcell5, Malignant_cell)

Warning message:
“Identity: CD8_Tcell1 not present in group su010_pre. Skipping su010_pre”
Testing group su002_pre: (CD8_Tcell1) vs (Macrophage, CD4_Tcell1, Dendritic_cell, NK_cell, Malignant_cell, CD8_Tcell2, CD8_Tcell6, CD4_Tcell4, CD4_Tcell5, Fibroblast, Myofibroblast, Plasma_cell, CD8_Tcell4, CD4_Tcell3, CD4_Tcell2, CD8_Tcell3, CD8_Tcell5, Endotherial_cell)

Testing group su002_post: (CD8_Tcell1) vs (CD8_Tcell4, CD4_Tcell2, CD4_Tcell1, CD8_Tcell3, CD4_Tcell3, CD8_Tcell2, CD4_Tcell4, Bcell, CD4_Tcell5, CD8_Tcell6, Plasma_cell, Fibroblast, NK_cell, Dendritic_cell, Endotherial_cell, Macrophage, Myofibroblast, Plasmacytoid_dendritic_cell)

Testing group su003_pre: (CD8_Tcell1) vs (CD8_Tcell2, CD4_Tcell2, CD8_Tcell4, Fibroblast, Malignant_cell, CD4_Tcell4, CD4_Tcell1, Macrophage, CD4_Tcell3, Myofibroblast, NK_cell, Plasmacytoid_dendritic_cell, Dendritic_cell, CD8_Tcell6, Endotherial_cell, Plasma_cell, CD8_Tcell3, CD4_Tcell5, CD8_Tcell5)

Testing group su007_post: (CD8_Tcell1) vs (Dendritic_cell, Bcell, CD8_Tcell2, CD4_Tcell5, CD4_Tcell1, CD4_Tcell3, CD8_Tcell4, CD4_Tcell4, Myofibroblast, Malignant_cell, CD8_Tcell3, Plasma_cell, NK_cell, Endotherial_cell, CD8_Tcell6, CD4_Tcell2, Macrophage, Fibroblast, CD8_Tcell5)

Testing group su010_post: (CD8_Tcell1) vs (CD4_Tcell2, CD4_Tcell1, Malignant_cell, CD8_Tcell5, CD8_Tcell2, CD8_Tcell3, Macrophage, CD4_Tcell5, CD4_Tcell4, NK_cell, Dendritic_cell, Fibroblast, CD4_Tcell3, CD8_Tcell6, CD8_Tcell4, Plasma_cell, Plasmacytoid_dendritic_cell)

Testing group su004_pre: (CD8_Tcell1) vs (CD8_Tcell2, CD8_Tcell3, CD4_Tcell4, CD4_Tcell5, CD4_Tcell3, CD4_Tcell1, CD4_Tcell2, CD8_Tcell4, Bcell, NK_cell, CD8_Tcell6, Dendritic_cell, Macrophage, Fibroblast, Endotherial_cell, Malignant_cell, Plasmacytoid_dendritic_cell, Myofibroblast, Plasma_cell)

Testing group su012_post: (CD8_Tcell1) vs (CD8_Tcell4, CD8_Tcell5, CD4_Tcell1, CD8_Tcell6, CD4_Tcell2, CD4_Tcell4, CD8_Tcell2, Macrophage, Malignant_cell, CD8_Tcell3, CD4_Tcell3, CD4_Tcell5, Bcell, Fibroblast, Plasma_cell, NK_cell, Plasmacytoid_dendritic_cell, Dendritic_cell)

Testing group su004_post: (CD8_Tcell1) vs (CD8_Tcell2, CD4_Tcell4, CD4_Tcell5, CD4_Tcell1, CD4_Tcell2, Macrophage, CD4_Tcell3, CD8_Tcell3, CD8_Tcell6, NK_cell, CD8_Tcell5, CD8_Tcell4, Dendritic_cell, Fibroblast, Plasmacytoid_dendritic_cell, Malignant_cell, Bcell, Myofibroblast, Plasma_cell, Endotherial_cell)

Testing group su003_post: (CD8_Tcell1) vs (Malignant_cell, Dendritic_cell, Fibroblast, CD4_Tcell1, Myofibroblast, Macrophage, CD8_Tcell4, CD4_Tcell2, CD8_Tcell6, Plasmacytoid_dendritic_cell, CD8_Tcell5, NK_cell, Endotherial_cell, CD8_Tcell3, CD4_Tcell4, CD8_Tcell2, Bcell, CD4_Tcell3, CD4_Tcell5, Plasma_cell)

Testing group su001_pre: (CD8_Tcell1) vs (Malignant_cell, CD4_Tcell5, Dendritic_cell, NK_cell, CD4_Tcell1, Macrophage, Endotherial_cell, CD4_Tcell2, Fibroblast, CD8_Tcell3, CD4_Tcell4, CD4_Tcell3, CD8_Tcell4, CD8_Tcell6, Plasmacytoid_dendritic_cell, CD8_Tcell2, Plasma_cell, Myofibroblast, CD8_Tcell5, Bcell)

Testing group su007_pre: (CD8_Tcell1) vs (CD4_Tcell1, CD8_Tcell2, CD4_Tcell3, CD4_Tcell4, CD8_Tcell4, CD4_Tcell5, CD8_Tcell3, CD4_Tcell2, NK_cell, CD8_Tcell5, CD8_Tcell6, Macrophage, Malignant_cell, Dendritic_cell, Plasma_cell, Plasmacytoid_dendritic_cell, Fibroblast, Myofibroblast, Endotherial_cell, Bcell)

Testing group su008_pre: (CD8_Tcell1) vs (Plasmacytoid_dendritic_cell, Plasma_cell, Dendritic_cell, Malignant_cell, Bcell, NK_cell, Macrophage, CD8_Tcell3, CD8_Tcell5, CD8_Tcell4, CD4_Tcell1, Fibroblast, Myofibroblast, CD8_Tcell2, CD4_Tcell5, CD8_Tcell6, CD4_Tcell2, CD4_Tcell3, CD4_Tcell4, Endotherial_cell)

Testing group su012_pre: (CD8_Tcell1) vs (CD4_Tcell1, Malignant_cell, CD4_Tcell4, Macrophage, CD4_Tcell3, CD8_Tcell4, CD4_Tcell5, NK_cell, Bcell, CD4_Tcell2, Plasma_cell, CD8_Tcell5, Fibroblast, CD8_Tcell2, CD8_Tcell3, CD8_Tcell6, Dendritic_cell, Plasmacytoid_dendritic_cell)

Testing group su005_pre: (CD8_Tcell1) vs (Macrophage, CD8_Tcell5, CD4_Tcell1, Dendritic_cell, CD8_Tcell4, Plasmacytoid_dendritic_cell, NK_cell, Malignant_cell, Plasma_cell, CD4_Tcell3, CD8_Tcell2, Bcell, CD4_Tcell4, CD8_Tcell3, Fibroblast, CD8_Tcell6, CD4_Tcell2, CD4_Tcell5, Endotherial_cell, Myofibroblast)

Testing group su005_post: (CD8_Tcell1) vs (CD4_Tcell1, CD8_Tcell3, CD8_Tcell6, CD4_Tcell5, CD4_Tcell4, CD8_Tcell2, CD4_Tcell3, CD8_Tcell4, NK_cell, CD4_Tcell2, CD8_Tcell5, Dendritic_cell, Bcell, Macrophage, Plasma_cell, Fibroblast, Plasmacytoid_dendritic_cell, Myofibroblast, Endotherial_cell, Malignant_cell)

Testing group su006_post: (CD8_Tcell1) vs (Macrophage, Plasma_cell, Dendritic_cell, CD8_Tcell5, Plasmacytoid_dendritic_cell, CD8_Tcell6, CD8_Tcell4, Bcell, Fibroblast, NK_cell, CD4_Tcell1, CD8_Tcell3, CD4_Tcell2, CD8_Tcell2, CD4_Tcell3, CD4_Tcell4, CD4_Tcell5, Malignant_cell, Myofibroblast, Endotherial_cell)

Testing group su009_pre: (CD8_Tcell1) vs (CD4_Tcell2, CD8_Tcell5, CD8_Tcell6, CD4_Tcell3, Malignant_cell, CD8_Tcell2, CD8_Tcell3, Dendritic_cell, CD4_Tcell4, CD4_Tcell1, NK_cell, CD4_Tcell5, Fibroblast, CD8_Tcell4, Plasmacytoid_dendritic_cell, Macrophage, Plasma_cell, Bcell, Myofibroblast)

Testing group su009_post: (CD8_Tcell1) vs (CD8_Tcell2, NK_cell, CD8_Tcell5, CD4_Tcell1, CD8_Tcell3, CD4_Tcell3, CD4_Tcell5, Malignant_cell, CD4_Tcell2, CD8_Tcell4, CD4_Tcell4, CD8_Tcell6, Fibroblast, Macrophage, Dendritic_cell, Plasma_cell, Bcell, Plasmacytoid_dendritic_cell, Myofibroblast)

Testing group su008_post: (CD8_Tcell1) vs (CD8_Tcell2, CD4_Tcell3, CD4_Tcell1, NK_cell, CD8_Tcell3, CD8_Tcell5, CD8_Tcell4, CD4_Tcell2, CD4_Tcell5, CD8_Tcell6, CD4_Tcell4, Fibroblast, Macrophage, Malignant_cell, Plasma_cell, Dendritic_cell, Plasmacytoid_dendritic_cell, Bcell, Endotherial_cell, Myofibroblast)

Testing group su006_pre: (CD8_Tcell1) vs (Plasma_cell, Macrophage, CD8_Tcell5, CD4_Tcell1, Bcell, Dendritic_cell, CD8_Tcell4, Plasmacytoid_dendritic_cell, Fibroblast, CD8_Tcell6, CD8_Tcell2, NK_cell, CD8_Tcell3, CD4_Tcell3, CD4_Tcell2, CD4_Tcell4, CD4_Tcell5, Endotherial_cell, Malignant_cell, Myofibroblast)

Testing group su001_post: (CD8_Tcell1) vs (CD4_Tcell2, CD8_Tcell3, CD4_Tcell3, CD4_Tcell5, CD4_Tcell4, CD8_Tcell6, CD8_Tcell2, NK_cell, CD4_Tcell1, Bcell, CD8_Tcell4, Macrophage, Dendritic_cell, Plasmacytoid_dendritic_cell, Plasma_cell, Fibroblast, Endotherial_cell, Myofibroblast, CD8_Tcell5, Malignant_cell)

Testing group su010_pre: (CD8_Tcell2) vs (CD4_Tcell3, Malignant_cell, CD4_Tcell1, NK_cell, Fibroblast, CD4_Tcell5, CD4_Tcell2, CD8_Tcell5, Plasma_cell, CD8_Tcell3, CD8_Tcell4, Dendritic_cell, CD8_Tcell6, Macrophage)

Testing group su002_pre: (CD8_Tcell2) vs (Macrophage, CD4_Tcell1, Dendritic_cell, NK_cell, Malignant_cell, CD8_Tcell6, CD4_Tcell4, CD4_Tcell5, Fibroblast, Myofibroblast, Plasma_cell, CD8_Tcell4, CD4_Tcell3, CD4_Tcell2, CD8_Tcell3, CD8_Tcell1, CD8_Tcell5, Endotherial_cell)

Testing group su002_post: (CD8_Tcell2) vs (CD8_Tcell4, CD4_Tcell2, CD4_Tcell1, CD8_Tcell1, CD8_Tcell3, CD4_Tcell3, CD4_Tcell4, Bcell, CD4_Tcell5, CD8_Tcell6, Plasma_cell, Fibroblast, NK_cell, Dendritic_cell, Endotherial_cell, Macrophage, Myofibroblast, Plasmacytoid_dendritic_cell)

Testing group su003_pre: (CD8_Tcell2) vs (CD4_Tcell2, CD8_Tcell4, Fibroblast, Malignant_cell, CD4_Tcell4, CD4_Tcell1, Macrophage, CD4_Tcell3, Myofibroblast, CD8_Tcell1, NK_cell, Plasmacytoid_dendritic_cell, Dendritic_cell, CD8_Tcell6, Endotherial_cell, Plasma_cell, CD8_Tcell3, CD4_Tcell5, CD8_Tcell5)

Testing group su007_post: (CD8_Tcell2) vs (Dendritic_cell, CD8_Tcell1, Bcell, CD4_Tcell5, CD4_Tcell1, CD4_Tcell3, CD8_Tcell4, CD4_Tcell4, Myofibroblast, Malignant_cell, CD8_Tcell3, Plasma_cell, NK_cell, Endotherial_cell, CD8_Tcell6, CD4_Tcell2, Macrophage, Fibroblast, CD8_Tcell5)

Testing group su010_post: (CD8_Tcell2) vs (CD4_Tcell2, CD4_Tcell1, Malignant_cell, CD8_Tcell5, CD8_Tcell3, Macrophage, CD4_Tcell5, CD4_Tcell4, CD8_Tcell1, NK_cell, Dendritic_cell, Fibroblast, CD4_Tcell3, CD8_Tcell6, CD8_Tcell4, Plasma_cell, Plasmacytoid_dendritic_cell)

Testing group su004_pre: (CD8_Tcell2) vs (CD8_Tcell3, CD4_Tcell4, CD4_Tcell5, CD4_Tcell3, CD8_Tcell1, CD4_Tcell1, CD4_Tcell2, CD8_Tcell4, Bcell, NK_cell, CD8_Tcell6, Dendritic_cell, Macrophage, Fibroblast, Endotherial_cell, Malignant_cell, Plasmacytoid_dendritic_cell, Myofibroblast, Plasma_cell)

Testing group su012_post: (CD8_Tcell2) vs (CD8_Tcell4, CD8_Tcell5, CD4_Tcell1, CD8_Tcell1, CD8_Tcell6, CD4_Tcell2, CD4_Tcell4, Macrophage, Malignant_cell, CD8_Tcell3, CD4_Tcell3, CD4_Tcell5, Bcell, Fibroblast, Plasma_cell, NK_cell, Plasmacytoid_dendritic_cell, Dendritic_cell)

Testing group su004_post: (CD8_Tcell2) vs (CD4_Tcell4, CD4_Tcell5, CD4_Tcell1, CD4_Tcell2, Macrophage, CD4_Tcell3, CD8_Tcell1, CD8_Tcell3, CD8_Tcell6, NK_cell, CD8_Tcell5, CD8_Tcell4, Dendritic_cell, Fibroblast, Plasmacytoid_dendritic_cell, Malignant_cell, Bcell, Myofibroblast, Plasma_cell, Endotherial_cell)

Testing group su003_post: (CD8_Tcell2) vs (Malignant_cell, Dendritic_cell, Fibroblast, CD4_Tcell1, Myofibroblast, Macrophage, CD8_Tcell4, CD4_Tcell2, CD8_Tcell6, Plasmacytoid_dendritic_cell, CD8_Tcell5, NK_cell, Endotherial_cell, CD8_Tcell3, CD4_Tcell4, CD8_Tcell1, Bcell, CD4_Tcell3, CD4_Tcell5, Plasma_cell)

Testing group su001_pre: (CD8_Tcell2) vs (Malignant_cell, CD4_Tcell5, Dendritic_cell, NK_cell, CD4_Tcell1, Macrophage, Endotherial_cell, CD4_Tcell2, Fibroblast, CD8_Tcell3, CD8_Tcell1, CD4_Tcell4, CD4_Tcell3, CD8_Tcell4, CD8_Tcell6, Plasmacytoid_dendritic_cell, Plasma_cell, Myofibroblast, CD8_Tcell5, Bcell)

Testing group su007_pre: (CD8_Tcell2) vs (CD4_Tcell1, CD4_Tcell3, CD4_Tcell4, CD8_Tcell1, CD8_Tcell4, CD4_Tcell5, CD8_Tcell3, CD4_Tcell2, NK_cell, CD8_Tcell5, CD8_Tcell6, Macrophage, Malignant_cell, Dendritic_cell, Plasma_cell, Plasmacytoid_dendritic_cell, Fibroblast, Myofibroblast, Endotherial_cell, Bcell)

Testing group su008_pre: (CD8_Tcell2) vs (Plasmacytoid_dendritic_cell, Plasma_cell, Dendritic_cell, Malignant_cell, Bcell, NK_cell, Macrophage, CD8_Tcell3, CD8_Tcell5, CD8_Tcell4, CD4_Tcell1, Fibroblast, Myofibroblast, CD8_Tcell1, CD4_Tcell5, CD8_Tcell6, CD4_Tcell2, CD4_Tcell3, CD4_Tcell4, Endotherial_cell)

Testing group su012_pre: (CD8_Tcell2) vs (CD4_Tcell1, Malignant_cell, CD4_Tcell4, Macrophage, CD4_Tcell3, CD8_Tcell4, CD8_Tcell1, CD4_Tcell5, NK_cell, Bcell, CD4_Tcell2, Plasma_cell, CD8_Tcell5, Fibroblast, CD8_Tcell3, CD8_Tcell6, Dendritic_cell, Plasmacytoid_dendritic_cell)

Testing group su005_pre: (CD8_Tcell2) vs (Macrophage, CD8_Tcell5, CD4_Tcell1, Dendritic_cell, CD8_Tcell4, Plasmacytoid_dendritic_cell, NK_cell, Malignant_cell, Plasma_cell, CD4_Tcell3, Bcell, CD4_Tcell4, CD8_Tcell3, Fibroblast, CD8_Tcell6, CD8_Tcell1, CD4_Tcell2, CD4_Tcell5, Endotherial_cell, Myofibroblast)

Testing group su005_post: (CD8_Tcell2) vs (CD4_Tcell1, CD8_Tcell3, CD8_Tcell6, CD4_Tcell5, CD4_Tcell4, CD4_Tcell3, CD8_Tcell1, CD8_Tcell4, NK_cell, CD4_Tcell2, CD8_Tcell5, Dendritic_cell, Bcell, Macrophage, Plasma_cell, Fibroblast, Plasmacytoid_dendritic_cell, Myofibroblast, Endotherial_cell, Malignant_cell)

Testing group su006_post: (CD8_Tcell2) vs (Macrophage, Plasma_cell, Dendritic_cell, CD8_Tcell5, Plasmacytoid_dendritic_cell, CD8_Tcell6, CD8_Tcell4, Bcell, Fibroblast, NK_cell, CD4_Tcell1, CD8_Tcell3, CD4_Tcell2, CD8_Tcell1, CD4_Tcell3, CD4_Tcell4, CD4_Tcell5, Malignant_cell, Myofibroblast, Endotherial_cell)

Testing group su009_pre: (CD8_Tcell2) vs (CD8_Tcell1, CD4_Tcell2, CD8_Tcell5, CD8_Tcell6, CD4_Tcell3, Malignant_cell, CD8_Tcell3, Dendritic_cell, CD4_Tcell4, CD4_Tcell1, NK_cell, CD4_Tcell5, Fibroblast, CD8_Tcell4, Plasmacytoid_dendritic_cell, Macrophage, Plasma_cell, Bcell, Myofibroblast)

Testing group su009_post: (CD8_Tcell2) vs (CD8_Tcell1, NK_cell, CD8_Tcell5, CD4_Tcell1, CD8_Tcell3, CD4_Tcell3, CD4_Tcell5, Malignant_cell, CD4_Tcell2, CD8_Tcell4, CD4_Tcell4, CD8_Tcell6, Fibroblast, Macrophage, Dendritic_cell, Plasma_cell, Bcell, Plasmacytoid_dendritic_cell, Myofibroblast)

Testing group su008_post: (CD8_Tcell2) vs (CD4_Tcell3, CD4_Tcell1, NK_cell, CD8_Tcell1, CD8_Tcell3, CD8_Tcell5, CD8_Tcell4, CD4_Tcell2, CD4_Tcell5, CD8_Tcell6, CD4_Tcell4, Fibroblast, Macrophage, Malignant_cell, Plasma_cell, Dendritic_cell, Plasmacytoid_dendritic_cell, Bcell, Endotherial_cell, Myofibroblast)

Testing group su006_pre: (CD8_Tcell2) vs (Plasma_cell, Macrophage, CD8_Tcell5, CD4_Tcell1, Bcell, Dendritic_cell, CD8_Tcell4, Plasmacytoid_dendritic_cell, Fibroblast, CD8_Tcell6, NK_cell, CD8_Tcell3, CD4_Tcell3, CD8_Tcell1, CD4_Tcell2, CD4_Tcell4, CD4_Tcell5, Endotherial_cell, Malignant_cell, Myofibroblast)

Testing group su001_post: (CD8_Tcell2) vs (CD8_Tcell1, CD4_Tcell2, CD8_Tcell3, CD4_Tcell3, CD4_Tcell5, CD4_Tcell4, CD8_Tcell6, NK_cell, CD4_Tcell1, Bcell, CD8_Tcell4, Macrophage, Dendritic_cell, Plasmacytoid_dendritic_cell, Plasma_cell, Fibroblast, Endotherial_cell, Myofibroblast, CD8_Tcell5, Malignant_cell)

Testing group su010_pre: (CD4_Tcell2) vs (CD8_Tcell2, CD4_Tcell3, Malignant_cell, CD4_Tcell1, NK_cell, Fibroblast, CD4_Tcell5, CD8_Tcell5, Plasma_cell, CD8_Tcell3, CD8_Tcell4, Dendritic_cell, CD8_Tcell6, Macrophage)

Testing group su002_pre: (CD4_Tcell2) vs (Macrophage, CD4_Tcell1, Dendritic_cell, NK_cell, Malignant_cell, CD8_Tcell2, CD8_Tcell6, CD4_Tcell4, CD4_Tcell5, Fibroblast, Myofibroblast, Plasma_cell, CD8_Tcell4, CD4_Tcell3, CD8_Tcell3, CD8_Tcell1, CD8_Tcell5, Endotherial_cell)

Testing group su002_post: (CD4_Tcell2) vs (CD8_Tcell4, CD4_Tcell1, CD8_Tcell1, CD8_Tcell3, CD4_Tcell3, CD8_Tcell2, CD4_Tcell4, Bcell, CD4_Tcell5, CD8_Tcell6, Plasma_cell, Fibroblast, NK_cell, Dendritic_cell, Endotherial_cell, Macrophage, Myofibroblast, Plasmacytoid_dendritic_cell)

Testing group su003_pre: (CD4_Tcell2) vs (CD8_Tcell2, CD8_Tcell4, Fibroblast, Malignant_cell, CD4_Tcell4, CD4_Tcell1, Macrophage, CD4_Tcell3, Myofibroblast, CD8_Tcell1, NK_cell, Plasmacytoid_dendritic_cell, Dendritic_cell, CD8_Tcell6, Endotherial_cell, Plasma_cell, CD8_Tcell3, CD4_Tcell5, CD8_Tcell5)

Testing group su007_post: (CD4_Tcell2) vs (Dendritic_cell, CD8_Tcell1, Bcell, CD8_Tcell2, CD4_Tcell5, CD4_Tcell1, CD4_Tcell3, CD8_Tcell4, CD4_Tcell4, Myofibroblast, Malignant_cell, CD8_Tcell3, Plasma_cell, NK_cell, Endotherial_cell, CD8_Tcell6, Macrophage, Fibroblast, CD8_Tcell5)

Testing group su010_post: (CD4_Tcell2) vs (CD4_Tcell1, Malignant_cell, CD8_Tcell5, CD8_Tcell2, CD8_Tcell3, Macrophage, CD4_Tcell5, CD4_Tcell4, CD8_Tcell1, NK_cell, Dendritic_cell, Fibroblast, CD4_Tcell3, CD8_Tcell6, CD8_Tcell4, Plasma_cell, Plasmacytoid_dendritic_cell)

Testing group su004_pre: (CD4_Tcell2) vs (CD8_Tcell2, CD8_Tcell3, CD4_Tcell4, CD4_Tcell5, CD4_Tcell3, CD8_Tcell1, CD4_Tcell1, CD8_Tcell4, Bcell, NK_cell, CD8_Tcell6, Dendritic_cell, Macrophage, Fibroblast, Endotherial_cell, Malignant_cell, Plasmacytoid_dendritic_cell, Myofibroblast, Plasma_cell)

Testing group su012_post: (CD4_Tcell2) vs (CD8_Tcell4, CD8_Tcell5, CD4_Tcell1, CD8_Tcell1, CD8_Tcell6, CD4_Tcell4, CD8_Tcell2, Macrophage, Malignant_cell, CD8_Tcell3, CD4_Tcell3, CD4_Tcell5, Bcell, Fibroblast, Plasma_cell, NK_cell, Plasmacytoid_dendritic_cell, Dendritic_cell)

Testing group su004_post: (CD4_Tcell2) vs (CD8_Tcell2, CD4_Tcell4, CD4_Tcell5, CD4_Tcell1, Macrophage, CD4_Tcell3, CD8_Tcell1, CD8_Tcell3, CD8_Tcell6, NK_cell, CD8_Tcell5, CD8_Tcell4, Dendritic_cell, Fibroblast, Plasmacytoid_dendritic_cell, Malignant_cell, Bcell, Myofibroblast, Plasma_cell, Endotherial_cell)

Testing group su003_post: (CD4_Tcell2) vs (Malignant_cell, Dendritic_cell, Fibroblast, CD4_Tcell1, Myofibroblast, Macrophage, CD8_Tcell4, CD8_Tcell6, Plasmacytoid_dendritic_cell, CD8_Tcell5, NK_cell, Endotherial_cell, CD8_Tcell3, CD4_Tcell4, CD8_Tcell1, CD8_Tcell2, Bcell, CD4_Tcell3, CD4_Tcell5, Plasma_cell)

Testing group su001_pre: (CD4_Tcell2) vs (Malignant_cell, CD4_Tcell5, Dendritic_cell, NK_cell, CD4_Tcell1, Macrophage, Endotherial_cell, Fibroblast, CD8_Tcell3, CD8_Tcell1, CD4_Tcell4, CD4_Tcell3, CD8_Tcell4, CD8_Tcell6, Plasmacytoid_dendritic_cell, CD8_Tcell2, Plasma_cell, Myofibroblast, CD8_Tcell5, Bcell)

Testing group su007_pre: (CD4_Tcell2) vs (CD4_Tcell1, CD8_Tcell2, CD4_Tcell3, CD4_Tcell4, CD8_Tcell1, CD8_Tcell4, CD4_Tcell5, CD8_Tcell3, NK_cell, CD8_Tcell5, CD8_Tcell6, Macrophage, Malignant_cell, Dendritic_cell, Plasma_cell, Plasmacytoid_dendritic_cell, Fibroblast, Myofibroblast, Endotherial_cell, Bcell)

Testing group su008_pre: (CD4_Tcell2) vs (Plasmacytoid_dendritic_cell, Plasma_cell, Dendritic_cell, Malignant_cell, Bcell, NK_cell, Macrophage, CD8_Tcell3, CD8_Tcell5, CD8_Tcell4, CD4_Tcell1, Fibroblast, Myofibroblast, CD8_Tcell1, CD8_Tcell2, CD4_Tcell5, CD8_Tcell6, CD4_Tcell3, CD4_Tcell4, Endotherial_cell)

Testing group su012_pre: (CD4_Tcell2) vs (CD4_Tcell1, Malignant_cell, CD4_Tcell4, Macrophage, CD4_Tcell3, CD8_Tcell4, CD8_Tcell1, CD4_Tcell5, NK_cell, Bcell, Plasma_cell, CD8_Tcell5, Fibroblast, CD8_Tcell2, CD8_Tcell3, CD8_Tcell6, Dendritic_cell, Plasmacytoid_dendritic_cell)

Testing group su005_pre: (CD4_Tcell2) vs (Macrophage, CD8_Tcell5, CD4_Tcell1, Dendritic_cell, CD8_Tcell4, Plasmacytoid_dendritic_cell, NK_cell, Malignant_cell, Plasma_cell, CD4_Tcell3, CD8_Tcell2, Bcell, CD4_Tcell4, CD8_Tcell3, Fibroblast, CD8_Tcell6, CD8_Tcell1, CD4_Tcell5, Endotherial_cell, Myofibroblast)

Testing group su005_post: (CD4_Tcell2) vs (CD4_Tcell1, CD8_Tcell3, CD8_Tcell6, CD4_Tcell5, CD4_Tcell4, CD8_Tcell2, CD4_Tcell3, CD8_Tcell1, CD8_Tcell4, NK_cell, CD8_Tcell5, Dendritic_cell, Bcell, Macrophage, Plasma_cell, Fibroblast, Plasmacytoid_dendritic_cell, Myofibroblast, Endotherial_cell, Malignant_cell)

Testing group su006_post: (CD4_Tcell2) vs (Macrophage, Plasma_cell, Dendritic_cell, CD8_Tcell5, Plasmacytoid_dendritic_cell, CD8_Tcell6, CD8_Tcell4, Bcell, Fibroblast, NK_cell, CD4_Tcell1, CD8_Tcell3, CD8_Tcell2, CD8_Tcell1, CD4_Tcell3, CD4_Tcell4, CD4_Tcell5, Malignant_cell, Myofibroblast, Endotherial_cell)

Testing group su009_pre: (CD4_Tcell2) vs (CD8_Tcell1, CD8_Tcell5, CD8_Tcell6, CD4_Tcell3, Malignant_cell, CD8_Tcell2, CD8_Tcell3, Dendritic_cell, CD4_Tcell4, CD4_Tcell1, NK_cell, CD4_Tcell5, Fibroblast, CD8_Tcell4, Plasmacytoid_dendritic_cell, Macrophage, Plasma_cell, Bcell, Myofibroblast)

Testing group su009_post: (CD4_Tcell2) vs (CD8_Tcell1, CD8_Tcell2, NK_cell, CD8_Tcell5, CD4_Tcell1, CD8_Tcell3, CD4_Tcell3, CD4_Tcell5, Malignant_cell, CD8_Tcell4, CD4_Tcell4, CD8_Tcell6, Fibroblast, Macrophage, Dendritic_cell, Plasma_cell, Bcell, Plasmacytoid_dendritic_cell, Myofibroblast)

Testing group su008_post: (CD4_Tcell2) vs (CD8_Tcell2, CD4_Tcell3, CD4_Tcell1, NK_cell, CD8_Tcell1, CD8_Tcell3, CD8_Tcell5, CD8_Tcell4, CD4_Tcell5, CD8_Tcell6, CD4_Tcell4, Fibroblast, Macrophage, Malignant_cell, Plasma_cell, Dendritic_cell, Plasmacytoid_dendritic_cell, Bcell, Endotherial_cell, Myofibroblast)

Testing group su006_pre: (CD4_Tcell2) vs (Plasma_cell, Macrophage, CD8_Tcell5, CD4_Tcell1, Bcell, Dendritic_cell, CD8_Tcell4, Plasmacytoid_dendritic_cell, Fibroblast, CD8_Tcell6, CD8_Tcell2, NK_cell, CD8_Tcell3, CD4_Tcell3, CD8_Tcell1, CD4_Tcell4, CD4_Tcell5, Endotherial_cell, Malignant_cell, Myofibroblast)

Testing group su001_post: (CD4_Tcell2) vs (CD8_Tcell1, CD8_Tcell3, CD4_Tcell3, CD4_Tcell5, CD4_Tcell4, CD8_Tcell6, CD8_Tcell2, NK_cell, CD4_Tcell1, Bcell, CD8_Tcell4, Macrophage, Dendritic_cell, Plasmacytoid_dendritic_cell, Plasma_cell, Fibroblast, Endotherial_cell, Myofibroblast, CD8_Tcell5, Malignant_cell)

Testing group su010_pre: (CD4_Tcell3) vs (CD8_Tcell2, Malignant_cell, CD4_Tcell1, NK_cell, Fibroblast, CD4_Tcell5, CD4_Tcell2, CD8_Tcell5, Plasma_cell, CD8_Tcell3, CD8_Tcell4, Dendritic_cell, CD8_Tcell6, Macrophage)

Testing group su002_pre: (CD4_Tcell3) vs (Macrophage, CD4_Tcell1, Dendritic_cell, NK_cell, Malignant_cell, CD8_Tcell2, CD8_Tcell6, CD4_Tcell4, CD4_Tcell5, Fibroblast, Myofibroblast, Plasma_cell, CD8_Tcell4, CD4_Tcell2, CD8_Tcell3, CD8_Tcell1, CD8_Tcell5, Endotherial_cell)

Testing group su002_post: (CD4_Tcell3) vs (CD8_Tcell4, CD4_Tcell2, CD4_Tcell1, CD8_Tcell1, CD8_Tcell3, CD8_Tcell2, CD4_Tcell4, Bcell, CD4_Tcell5, CD8_Tcell6, Plasma_cell, Fibroblast, NK_cell, Dendritic_cell, Endotherial_cell, Macrophage, Myofibroblast, Plasmacytoid_dendritic_cell)

Testing group su003_pre: (CD4_Tcell3) vs (CD8_Tcell2, CD4_Tcell2, CD8_Tcell4, Fibroblast, Malignant_cell, CD4_Tcell4, CD4_Tcell1, Macrophage, Myofibroblast, CD8_Tcell1, NK_cell, Plasmacytoid_dendritic_cell, Dendritic_cell, CD8_Tcell6, Endotherial_cell, Plasma_cell, CD8_Tcell3, CD4_Tcell5, CD8_Tcell5)

Testing group su007_post: (CD4_Tcell3) vs (Dendritic_cell, CD8_Tcell1, Bcell, CD8_Tcell2, CD4_Tcell5, CD4_Tcell1, CD8_Tcell4, CD4_Tcell4, Myofibroblast, Malignant_cell, CD8_Tcell3, Plasma_cell, NK_cell, Endotherial_cell, CD8_Tcell6, CD4_Tcell2, Macrophage, Fibroblast, CD8_Tcell5)

Testing group su010_post: (CD4_Tcell3) vs (CD4_Tcell2, CD4_Tcell1, Malignant_cell, CD8_Tcell5, CD8_Tcell2, CD8_Tcell3, Macrophage, CD4_Tcell5, CD4_Tcell4, CD8_Tcell1, NK_cell, Dendritic_cell, Fibroblast, CD8_Tcell6, CD8_Tcell4, Plasma_cell, Plasmacytoid_dendritic_cell)

Testing group su004_pre: (CD4_Tcell3) vs (CD8_Tcell2, CD8_Tcell3, CD4_Tcell4, CD4_Tcell5, CD8_Tcell1, CD4_Tcell1, CD4_Tcell2, CD8_Tcell4, Bcell, NK_cell, CD8_Tcell6, Dendritic_cell, Macrophage, Fibroblast, Endotherial_cell, Malignant_cell, Plasmacytoid_dendritic_cell, Myofibroblast, Plasma_cell)

Testing group su012_post: (CD4_Tcell3) vs (CD8_Tcell4, CD8_Tcell5, CD4_Tcell1, CD8_Tcell1, CD8_Tcell6, CD4_Tcell2, CD4_Tcell4, CD8_Tcell2, Macrophage, Malignant_cell, CD8_Tcell3, CD4_Tcell5, Bcell, Fibroblast, Plasma_cell, NK_cell, Plasmacytoid_dendritic_cell, Dendritic_cell)

Testing group su004_post: (CD4_Tcell3) vs (CD8_Tcell2, CD4_Tcell4, CD4_Tcell5, CD4_Tcell1, CD4_Tcell2, Macrophage, CD8_Tcell1, CD8_Tcell3, CD8_Tcell6, NK_cell, CD8_Tcell5, CD8_Tcell4, Dendritic_cell, Fibroblast, Plasmacytoid_dendritic_cell, Malignant_cell, Bcell, Myofibroblast, Plasma_cell, Endotherial_cell)

Testing group su003_post: (CD4_Tcell3) vs (Malignant_cell, Dendritic_cell, Fibroblast, CD4_Tcell1, Myofibroblast, Macrophage, CD8_Tcell4, CD4_Tcell2, CD8_Tcell6, Plasmacytoid_dendritic_cell, CD8_Tcell5, NK_cell, Endotherial_cell, CD8_Tcell3, CD4_Tcell4, CD8_Tcell1, CD8_Tcell2, Bcell, CD4_Tcell5, Plasma_cell)

Testing group su001_pre: (CD4_Tcell3) vs (Malignant_cell, CD4_Tcell5, Dendritic_cell, NK_cell, CD4_Tcell1, Macrophage, Endotherial_cell, CD4_Tcell2, Fibroblast, CD8_Tcell3, CD8_Tcell1, CD4_Tcell4, CD8_Tcell4, CD8_Tcell6, Plasmacytoid_dendritic_cell, CD8_Tcell2, Plasma_cell, Myofibroblast, CD8_Tcell5, Bcell)

Testing group su007_pre: (CD4_Tcell3) vs (CD4_Tcell1, CD8_Tcell2, CD4_Tcell4, CD8_Tcell1, CD8_Tcell4, CD4_Tcell5, CD8_Tcell3, CD4_Tcell2, NK_cell, CD8_Tcell5, CD8_Tcell6, Macrophage, Malignant_cell, Dendritic_cell, Plasma_cell, Plasmacytoid_dendritic_cell, Fibroblast, Myofibroblast, Endotherial_cell, Bcell)

Testing group su008_pre: (CD4_Tcell3) vs (Plasmacytoid_dendritic_cell, Plasma_cell, Dendritic_cell, Malignant_cell, Bcell, NK_cell, Macrophage, CD8_Tcell3, CD8_Tcell5, CD8_Tcell4, CD4_Tcell1, Fibroblast, Myofibroblast, CD8_Tcell1, CD8_Tcell2, CD4_Tcell5, CD8_Tcell6, CD4_Tcell2, CD4_Tcell4, Endotherial_cell)

Testing group su012_pre: (CD4_Tcell3) vs (CD4_Tcell1, Malignant_cell, CD4_Tcell4, Macrophage, CD8_Tcell4, CD8_Tcell1, CD4_Tcell5, NK_cell, Bcell, CD4_Tcell2, Plasma_cell, CD8_Tcell5, Fibroblast, CD8_Tcell2, CD8_Tcell3, CD8_Tcell6, Dendritic_cell, Plasmacytoid_dendritic_cell)

Testing group su005_pre: (CD4_Tcell3) vs (Macrophage, CD8_Tcell5, CD4_Tcell1, Dendritic_cell, CD8_Tcell4, Plasmacytoid_dendritic_cell, NK_cell, Malignant_cell, Plasma_cell, CD8_Tcell2, Bcell, CD4_Tcell4, CD8_Tcell3, Fibroblast, CD8_Tcell6, CD8_Tcell1, CD4_Tcell2, CD4_Tcell5, Endotherial_cell, Myofibroblast)

Testing group su005_post: (CD4_Tcell3) vs (CD4_Tcell1, CD8_Tcell3, CD8_Tcell6, CD4_Tcell5, CD4_Tcell4, CD8_Tcell2, CD8_Tcell1, CD8_Tcell4, NK_cell, CD4_Tcell2, CD8_Tcell5, Dendritic_cell, Bcell, Macrophage, Plasma_cell, Fibroblast, Plasmacytoid_dendritic_cell, Myofibroblast, Endotherial_cell, Malignant_cell)

Testing group su006_post: (CD4_Tcell3) vs (Macrophage, Plasma_cell, Dendritic_cell, CD8_Tcell5, Plasmacytoid_dendritic_cell, CD8_Tcell6, CD8_Tcell4, Bcell, Fibroblast, NK_cell, CD4_Tcell1, CD8_Tcell3, CD4_Tcell2, CD8_Tcell2, CD8_Tcell1, CD4_Tcell4, CD4_Tcell5, Malignant_cell, Myofibroblast, Endotherial_cell)

Testing group su009_pre: (CD4_Tcell3) vs (CD8_Tcell1, CD4_Tcell2, CD8_Tcell5, CD8_Tcell6, Malignant_cell, CD8_Tcell2, CD8_Tcell3, Dendritic_cell, CD4_Tcell4, CD4_Tcell1, NK_cell, CD4_Tcell5, Fibroblast, CD8_Tcell4, Plasmacytoid_dendritic_cell, Macrophage, Plasma_cell, Bcell, Myofibroblast)

Testing group su009_post: (CD4_Tcell3) vs (CD8_Tcell1, CD8_Tcell2, NK_cell, CD8_Tcell5, CD4_Tcell1, CD8_Tcell3, CD4_Tcell5, Malignant_cell, CD4_Tcell2, CD8_Tcell4, CD4_Tcell4, CD8_Tcell6, Fibroblast, Macrophage, Dendritic_cell, Plasma_cell, Bcell, Plasmacytoid_dendritic_cell, Myofibroblast)

Testing group su008_post: (CD4_Tcell3) vs (CD8_Tcell2, CD4_Tcell1, NK_cell, CD8_Tcell1, CD8_Tcell3, CD8_Tcell5, CD8_Tcell4, CD4_Tcell2, CD4_Tcell5, CD8_Tcell6, CD4_Tcell4, Fibroblast, Macrophage, Malignant_cell, Plasma_cell, Dendritic_cell, Plasmacytoid_dendritic_cell, Bcell, Endotherial_cell, Myofibroblast)

Testing group su006_pre: (CD4_Tcell3) vs (Plasma_cell, Macrophage, CD8_Tcell5, CD4_Tcell1, Bcell, Dendritic_cell, CD8_Tcell4, Plasmacytoid_dendritic_cell, Fibroblast, CD8_Tcell6, CD8_Tcell2, NK_cell, CD8_Tcell3, CD8_Tcell1, CD4_Tcell2, CD4_Tcell4, CD4_Tcell5, Endotherial_cell, Malignant_cell, Myofibroblast)

Testing group su001_post: (CD4_Tcell3) vs (CD8_Tcell1, CD4_Tcell2, CD8_Tcell3, CD4_Tcell5, CD4_Tcell4, CD8_Tcell6, CD8_Tcell2, NK_cell, CD4_Tcell1, Bcell, CD8_Tcell4, Macrophage, Dendritic_cell, Plasmacytoid_dendritic_cell, Plasma_cell, Fibroblast, Endotherial_cell, Myofibroblast, CD8_Tcell5, Malignant_cell)

Testing group su010_pre: (Malignant_cell) vs (CD8_Tcell2, CD4_Tcell3, CD4_Tcell1, NK_cell, Fibroblast, CD4_Tcell5, CD4_Tcell2, CD8_Tcell5, Plasma_cell, CD8_Tcell3, CD8_Tcell4, Dendritic_cell, CD8_Tcell6, Macrophage)

Testing group su002_pre: (Malignant_cell) vs (Macrophage, CD4_Tcell1, Dendritic_cell, NK_cell, CD8_Tcell2, CD8_Tcell6, CD4_Tcell4, CD4_Tcell5, Fibroblast, Myofibroblast, Plasma_cell, CD8_Tcell4, CD4_Tcell3, CD4_Tcell2, CD8_Tcell3, CD8_Tcell1, CD8_Tcell5, Endotherial_cell)

Warning message:
“Identity: Malignant_cell not present in group su002_post. Skipping su002_post”
Testing group su003_pre: (Malignant_cell) vs (CD8_Tcell2, CD4_Tcell2, CD8_Tcell4, Fibroblast, CD4_Tcell4, CD4_Tcell1, Macrophage, CD4_Tcell3, Myofibroblast, CD8_Tcell1, NK_cell, Plasmacytoid_dendritic_cell, Dendritic_cell, CD8_Tcell6, Endotherial_cell, Plasma_cell, CD8_Tcell3, CD4_Tcell5, CD8_Tcell5)

Testing group su007_post: (Malignant_cell) vs (Dendritic_cell, CD8_Tcell1, Bcell, CD8_Tcell2, CD4_Tcell5, CD4_Tcell1, CD4_Tcell3, CD8_Tcell4, CD4_Tcell4, Myofibroblast, CD8_Tcell3, Plasma_cell, NK_cell, Endotherial_cell, CD8_Tcell6, CD4_Tcell2, Macrophage, Fibroblast, CD8_Tcell5)

Testing group su010_post: (Malignant_cell) vs (CD4_Tcell2, CD4_Tcell1, CD8_Tcell5, CD8_Tcell2, CD8_Tcell3, Macrophage, CD4_Tcell5, CD4_Tcell4, CD8_Tcell1, NK_cell, Dendritic_cell, Fibroblast, CD4_Tcell3, CD8_Tcell6, CD8_Tcell4, Plasma_cell, Plasmacytoid_dendritic_cell)

Testing group su004_pre: (Malignant_cell) vs (CD8_Tcell2, CD8_Tcell3, CD4_Tcell4, CD4_Tcell5, CD4_Tcell3, CD8_Tcell1, CD4_Tcell1, CD4_Tcell2, CD8_Tcell4, Bcell, NK_cell, CD8_Tcell6, Dendritic_cell, Macrophage, Fibroblast, Endotherial_cell, Plasmacytoid_dendritic_cell, Myofibroblast, Plasma_cell)

Testing group su012_post: (Malignant_cell) vs (CD8_Tcell4, CD8_Tcell5, CD4_Tcell1, CD8_Tcell1, CD8_Tcell6, CD4_Tcell2, CD4_Tcell4, CD8_Tcell2, Macrophage, CD8_Tcell3, CD4_Tcell3, CD4_Tcell5, Bcell, Fibroblast, Plasma_cell, NK_cell, Plasmacytoid_dendritic_cell, Dendritic_cell)

Testing group su004_post: (Malignant_cell) vs (CD8_Tcell2, CD4_Tcell4, CD4_Tcell5, CD4_Tcell1, CD4_Tcell2, Macrophage, CD4_Tcell3, CD8_Tcell1, CD8_Tcell3, CD8_Tcell6, NK_cell, CD8_Tcell5, CD8_Tcell4, Dendritic_cell, Fibroblast, Plasmacytoid_dendritic_cell, Bcell, Myofibroblast, Plasma_cell, Endotherial_cell)

Testing group su003_post: (Malignant_cell) vs (Dendritic_cell, Fibroblast, CD4_Tcell1, Myofibroblast, Macrophage, CD8_Tcell4, CD4_Tcell2, CD8_Tcell6, Plasmacytoid_dendritic_cell, CD8_Tcell5, NK_cell, Endotherial_cell, CD8_Tcell3, CD4_Tcell4, CD8_Tcell1, CD8_Tcell2, Bcell, CD4_Tcell3, CD4_Tcell5, Plasma_cell)

Testing group su001_pre: (Malignant_cell) vs (CD4_Tcell5, Dendritic_cell, NK_cell, CD4_Tcell1, Macrophage, Endotherial_cell, CD4_Tcell2, Fibroblast, CD8_Tcell3, CD8_Tcell1, CD4_Tcell4, CD4_Tcell3, CD8_Tcell4, CD8_Tcell6, Plasmacytoid_dendritic_cell, CD8_Tcell2, Plasma_cell, Myofibroblast, CD8_Tcell5, Bcell)

Testing group su007_pre: (Malignant_cell) vs (CD4_Tcell1, CD8_Tcell2, CD4_Tcell3, CD4_Tcell4, CD8_Tcell1, CD8_Tcell4, CD4_Tcell5, CD8_Tcell3, CD4_Tcell2, NK_cell, CD8_Tcell5, CD8_Tcell6, Macrophage, Dendritic_cell, Plasma_cell, Plasmacytoid_dendritic_cell, Fibroblast, Myofibroblast, Endotherial_cell, Bcell)

Testing group su008_pre: (Malignant_cell) vs (Plasmacytoid_dendritic_cell, Plasma_cell, Dendritic_cell, Bcell, NK_cell, Macrophage, CD8_Tcell3, CD8_Tcell5, CD8_Tcell4, CD4_Tcell1, Fibroblast, Myofibroblast, CD8_Tcell1, CD8_Tcell2, CD4_Tcell5, CD8_Tcell6, CD4_Tcell2, CD4_Tcell3, CD4_Tcell4, Endotherial_cell)

Testing group su012_pre: (Malignant_cell) vs (CD4_Tcell1, CD4_Tcell4, Macrophage, CD4_Tcell3, CD8_Tcell4, CD8_Tcell1, CD4_Tcell5, NK_cell, Bcell, CD4_Tcell2, Plasma_cell, CD8_Tcell5, Fibroblast, CD8_Tcell2, CD8_Tcell3, CD8_Tcell6, Dendritic_cell, Plasmacytoid_dendritic_cell)

Testing group su005_pre: (Malignant_cell) vs (Macrophage, CD8_Tcell5, CD4_Tcell1, Dendritic_cell, CD8_Tcell4, Plasmacytoid_dendritic_cell, NK_cell, Plasma_cell, CD4_Tcell3, CD8_Tcell2, Bcell, CD4_Tcell4, CD8_Tcell3, Fibroblast, CD8_Tcell6, CD8_Tcell1, CD4_Tcell2, CD4_Tcell5, Endotherial_cell, Myofibroblast)

Testing group su005_post: (Malignant_cell) vs (CD4_Tcell1, CD8_Tcell3, CD8_Tcell6, CD4_Tcell5, CD4_Tcell4, CD8_Tcell2, CD4_Tcell3, CD8_Tcell1, CD8_Tcell4, NK_cell, CD4_Tcell2, CD8_Tcell5, Dendritic_cell, Bcell, Macrophage, Plasma_cell, Fibroblast, Plasmacytoid_dendritic_cell, Myofibroblast, Endotherial_cell)

Testing group su006_post: (Malignant_cell) vs (Macrophage, Plasma_cell, Dendritic_cell, CD8_Tcell5, Plasmacytoid_dendritic_cell, CD8_Tcell6, CD8_Tcell4, Bcell, Fibroblast, NK_cell, CD4_Tcell1, CD8_Tcell3, CD4_Tcell2, CD8_Tcell2, CD8_Tcell1, CD4_Tcell3, CD4_Tcell4, CD4_Tcell5, Myofibroblast, Endotherial_cell)

Testing group su009_pre: (Malignant_cell) vs (CD8_Tcell1, CD4_Tcell2, CD8_Tcell5, CD8_Tcell6, CD4_Tcell3, CD8_Tcell2, CD8_Tcell3, Dendritic_cell, CD4_Tcell4, CD4_Tcell1, NK_cell, CD4_Tcell5, Fibroblast, CD8_Tcell4, Plasmacytoid_dendritic_cell, Macrophage, Plasma_cell, Bcell, Myofibroblast)

Testing group su009_post: (Malignant_cell) vs (CD8_Tcell1, CD8_Tcell2, NK_cell, CD8_Tcell5, CD4_Tcell1, CD8_Tcell3, CD4_Tcell3, CD4_Tcell5, CD4_Tcell2, CD8_Tcell4, CD4_Tcell4, CD8_Tcell6, Fibroblast, Macrophage, Dendritic_cell, Plasma_cell, Bcell, Plasmacytoid_dendritic_cell, Myofibroblast)

Testing group su008_post: (Malignant_cell) vs (CD8_Tcell2, CD4_Tcell3, CD4_Tcell1, NK_cell, CD8_Tcell1, CD8_Tcell3, CD8_Tcell5, CD8_Tcell4, CD4_Tcell2, CD4_Tcell5, CD8_Tcell6, CD4_Tcell4, Fibroblast, Macrophage, Plasma_cell, Dendritic_cell, Plasmacytoid_dendritic_cell, Bcell, Endotherial_cell, Myofibroblast)

Testing group su006_pre: (Malignant_cell) vs (Plasma_cell, Macrophage, CD8_Tcell5, CD4_Tcell1, Bcell, Dendritic_cell, CD8_Tcell4, Plasmacytoid_dendritic_cell, Fibroblast, CD8_Tcell6, CD8_Tcell2, NK_cell, CD8_Tcell3, CD4_Tcell3, CD8_Tcell1, CD4_Tcell2, CD4_Tcell4, CD4_Tcell5, Endotherial_cell, Myofibroblast)

Testing group su001_post: (Malignant_cell) vs (CD8_Tcell1, CD4_Tcell2, CD8_Tcell3, CD4_Tcell3, CD4_Tcell5, CD4_Tcell4, CD8_Tcell6, CD8_Tcell2, NK_cell, CD4_Tcell1, Bcell, CD8_Tcell4, Macrophage, Dendritic_cell, Plasmacytoid_dendritic_cell, Plasma_cell, Fibroblast, Endotherial_cell, Myofibroblast, CD8_Tcell5)

Testing group su010_pre: (Plasma_cell) vs (CD8_Tcell2, CD4_Tcell3, Malignant_cell, CD4_Tcell1, NK_cell, Fibroblast, CD4_Tcell5, CD4_Tcell2, CD8_Tcell5, CD8_Tcell3, CD8_Tcell4, Dendritic_cell, CD8_Tcell6, Macrophage)

Testing group su002_pre: (Plasma_cell) vs (Macrophage, CD4_Tcell1, Dendritic_cell, NK_cell, Malignant_cell, CD8_Tcell2, CD8_Tcell6, CD4_Tcell4, CD4_Tcell5, Fibroblast, Myofibroblast, CD8_Tcell4, CD4_Tcell3, CD4_Tcell2, CD8_Tcell3, CD8_Tcell1, CD8_Tcell5, Endotherial_cell)

Testing group su002_post: (Plasma_cell) vs (CD8_Tcell4, CD4_Tcell2, CD4_Tcell1, CD8_Tcell1, CD8_Tcell3, CD4_Tcell3, CD8_Tcell2, CD4_Tcell4, Bcell, CD4_Tcell5, CD8_Tcell6, Fibroblast, NK_cell, Dendritic_cell, Endotherial_cell, Macrophage, Myofibroblast, Plasmacytoid_dendritic_cell)

Testing group su003_pre: (Plasma_cell) vs (CD8_Tcell2, CD4_Tcell2, CD8_Tcell4, Fibroblast, Malignant_cell, CD4_Tcell4, CD4_Tcell1, Macrophage, CD4_Tcell3, Myofibroblast, CD8_Tcell1, NK_cell, Plasmacytoid_dendritic_cell, Dendritic_cell, CD8_Tcell6, Endotherial_cell, CD8_Tcell3, CD4_Tcell5, CD8_Tcell5)

Testing group su007_post: (Plasma_cell) vs (Dendritic_cell, CD8_Tcell1, Bcell, CD8_Tcell2, CD4_Tcell5, CD4_Tcell1, CD4_Tcell3, CD8_Tcell4, CD4_Tcell4, Myofibroblast, Malignant_cell, CD8_Tcell3, NK_cell, Endotherial_cell, CD8_Tcell6, CD4_Tcell2, Macrophage, Fibroblast, CD8_Tcell5)

Testing group su010_post: (Plasma_cell) vs (CD4_Tcell2, CD4_Tcell1, Malignant_cell, CD8_Tcell5, CD8_Tcell2, CD8_Tcell3, Macrophage, CD4_Tcell5, CD4_Tcell4, CD8_Tcell1, NK_cell, Dendritic_cell, Fibroblast, CD4_Tcell3, CD8_Tcell6, CD8_Tcell4, Plasmacytoid_dendritic_cell)

Testing group su004_pre: (Plasma_cell) vs (CD8_Tcell2, CD8_Tcell3, CD4_Tcell4, CD4_Tcell5, CD4_Tcell3, CD8_Tcell1, CD4_Tcell1, CD4_Tcell2, CD8_Tcell4, Bcell, NK_cell, CD8_Tcell6, Dendritic_cell, Macrophage, Fibroblast, Endotherial_cell, Malignant_cell, Plasmacytoid_dendritic_cell, Myofibroblast)

Testing group su012_post: (Plasma_cell) vs (CD8_Tcell4, CD8_Tcell5, CD4_Tcell1, CD8_Tcell1, CD8_Tcell6, CD4_Tcell2, CD4_Tcell4, CD8_Tcell2, Macrophage, Malignant_cell, CD8_Tcell3, CD4_Tcell3, CD4_Tcell5, Bcell, Fibroblast, NK_cell, Plasmacytoid_dendritic_cell, Dendritic_cell)

Testing group su004_post: (Plasma_cell) vs (CD8_Tcell2, CD4_Tcell4, CD4_Tcell5, CD4_Tcell1, CD4_Tcell2, Macrophage, CD4_Tcell3, CD8_Tcell1, CD8_Tcell3, CD8_Tcell6, NK_cell, CD8_Tcell5, CD8_Tcell4, Dendritic_cell, Fibroblast, Plasmacytoid_dendritic_cell, Malignant_cell, Bcell, Myofibroblast, Endotherial_cell)

Testing group su003_post: (Plasma_cell) vs (Malignant_cell, Dendritic_cell, Fibroblast, CD4_Tcell1, Myofibroblast, Macrophage, CD8_Tcell4, CD4_Tcell2, CD8_Tcell6, Plasmacytoid_dendritic_cell, CD8_Tcell5, NK_cell, Endotherial_cell, CD8_Tcell3, CD4_Tcell4, CD8_Tcell1, CD8_Tcell2, Bcell, CD4_Tcell3, CD4_Tcell5)

Testing group su001_pre: (Plasma_cell) vs (Malignant_cell, CD4_Tcell5, Dendritic_cell, NK_cell, CD4_Tcell1, Macrophage, Endotherial_cell, CD4_Tcell2, Fibroblast, CD8_Tcell3, CD8_Tcell1, CD4_Tcell4, CD4_Tcell3, CD8_Tcell4, CD8_Tcell6, Plasmacytoid_dendritic_cell, CD8_Tcell2, Myofibroblast, CD8_Tcell5, Bcell)

Testing group su007_pre: (Plasma_cell) vs (CD4_Tcell1, CD8_Tcell2, CD4_Tcell3, CD4_Tcell4, CD8_Tcell1, CD8_Tcell4, CD4_Tcell5, CD8_Tcell3, CD4_Tcell2, NK_cell, CD8_Tcell5, CD8_Tcell6, Macrophage, Malignant_cell, Dendritic_cell, Plasmacytoid_dendritic_cell, Fibroblast, Myofibroblast, Endotherial_cell, Bcell)

Testing group su008_pre: (Plasma_cell) vs (Plasmacytoid_dendritic_cell, Dendritic_cell, Malignant_cell, Bcell, NK_cell, Macrophage, CD8_Tcell3, CD8_Tcell5, CD8_Tcell4, CD4_Tcell1, Fibroblast, Myofibroblast, CD8_Tcell1, CD8_Tcell2, CD4_Tcell5, CD8_Tcell6, CD4_Tcell2, CD4_Tcell3, CD4_Tcell4, Endotherial_cell)

Testing group su012_pre: (Plasma_cell) vs (CD4_Tcell1, Malignant_cell, CD4_Tcell4, Macrophage, CD4_Tcell3, CD8_Tcell4, CD8_Tcell1, CD4_Tcell5, NK_cell, Bcell, CD4_Tcell2, CD8_Tcell5, Fibroblast, CD8_Tcell2, CD8_Tcell3, CD8_Tcell6, Dendritic_cell, Plasmacytoid_dendritic_cell)

Testing group su005_pre: (Plasma_cell) vs (Macrophage, CD8_Tcell5, CD4_Tcell1, Dendritic_cell, CD8_Tcell4, Plasmacytoid_dendritic_cell, NK_cell, Malignant_cell, CD4_Tcell3, CD8_Tcell2, Bcell, CD4_Tcell4, CD8_Tcell3, Fibroblast, CD8_Tcell6, CD8_Tcell1, CD4_Tcell2, CD4_Tcell5, Endotherial_cell, Myofibroblast)

Testing group su005_post: (Plasma_cell) vs (CD4_Tcell1, CD8_Tcell3, CD8_Tcell6, CD4_Tcell5, CD4_Tcell4, CD8_Tcell2, CD4_Tcell3, CD8_Tcell1, CD8_Tcell4, NK_cell, CD4_Tcell2, CD8_Tcell5, Dendritic_cell, Bcell, Macrophage, Fibroblast, Plasmacytoid_dendritic_cell, Myofibroblast, Endotherial_cell, Malignant_cell)

Testing group su006_post: (Plasma_cell) vs (Macrophage, Dendritic_cell, CD8_Tcell5, Plasmacytoid_dendritic_cell, CD8_Tcell6, CD8_Tcell4, Bcell, Fibroblast, NK_cell, CD4_Tcell1, CD8_Tcell3, CD4_Tcell2, CD8_Tcell2, CD8_Tcell1, CD4_Tcell3, CD4_Tcell4, CD4_Tcell5, Malignant_cell, Myofibroblast, Endotherial_cell)

Testing group su009_pre: (Plasma_cell) vs (CD8_Tcell1, CD4_Tcell2, CD8_Tcell5, CD8_Tcell6, CD4_Tcell3, Malignant_cell, CD8_Tcell2, CD8_Tcell3, Dendritic_cell, CD4_Tcell4, CD4_Tcell1, NK_cell, CD4_Tcell5, Fibroblast, CD8_Tcell4, Plasmacytoid_dendritic_cell, Macrophage, Bcell, Myofibroblast)

Testing group su009_post: (Plasma_cell) vs (CD8_Tcell1, CD8_Tcell2, NK_cell, CD8_Tcell5, CD4_Tcell1, CD8_Tcell3, CD4_Tcell3, CD4_Tcell5, Malignant_cell, CD4_Tcell2, CD8_Tcell4, CD4_Tcell4, CD8_Tcell6, Fibroblast, Macrophage, Dendritic_cell, Bcell, Plasmacytoid_dendritic_cell, Myofibroblast)

Testing group su008_post: (Plasma_cell) vs (CD8_Tcell2, CD4_Tcell3, CD4_Tcell1, NK_cell, CD8_Tcell1, CD8_Tcell3, CD8_Tcell5, CD8_Tcell4, CD4_Tcell2, CD4_Tcell5, CD8_Tcell6, CD4_Tcell4, Fibroblast, Macrophage, Malignant_cell, Dendritic_cell, Plasmacytoid_dendritic_cell, Bcell, Endotherial_cell, Myofibroblast)

Testing group su006_pre: (Plasma_cell) vs (Macrophage, CD8_Tcell5, CD4_Tcell1, Bcell, Dendritic_cell, CD8_Tcell4, Plasmacytoid_dendritic_cell, Fibroblast, CD8_Tcell6, CD8_Tcell2, NK_cell, CD8_Tcell3, CD4_Tcell3, CD8_Tcell1, CD4_Tcell2, CD4_Tcell4, CD4_Tcell5, Endotherial_cell, Malignant_cell, Myofibroblast)

Testing group su001_post: (Plasma_cell) vs (CD8_Tcell1, CD4_Tcell2, CD8_Tcell3, CD4_Tcell3, CD4_Tcell5, CD4_Tcell4, CD8_Tcell6, CD8_Tcell2, NK_cell, CD4_Tcell1, Bcell, CD8_Tcell4, Macrophage, Dendritic_cell, Plasmacytoid_dendritic_cell, Fibroblast, Endotherial_cell, Myofibroblast, CD8_Tcell5, Malignant_cell)

Warning message:
“Identity: CD4_Tcell4 not present in group su010_pre. Skipping su010_pre”
Testing group su002_pre: (CD4_Tcell4) vs (Macrophage, CD4_Tcell1, Dendritic_cell, NK_cell, Malignant_cell, CD8_Tcell2, CD8_Tcell6, CD4_Tcell5, Fibroblast, Myofibroblast, Plasma_cell, CD8_Tcell4, CD4_Tcell3, CD4_Tcell2, CD8_Tcell3, CD8_Tcell1, CD8_Tcell5, Endotherial_cell)

Testing group su002_post: (CD4_Tcell4) vs (CD8_Tcell4, CD4_Tcell2, CD4_Tcell1, CD8_Tcell1, CD8_Tcell3, CD4_Tcell3, CD8_Tcell2, Bcell, CD4_Tcell5, CD8_Tcell6, Plasma_cell, Fibroblast, NK_cell, Dendritic_cell, Endotherial_cell, Macrophage, Myofibroblast, Plasmacytoid_dendritic_cell)

Testing group su003_pre: (CD4_Tcell4) vs (CD8_Tcell2, CD4_Tcell2, CD8_Tcell4, Fibroblast, Malignant_cell, CD4_Tcell1, Macrophage, CD4_Tcell3, Myofibroblast, CD8_Tcell1, NK_cell, Plasmacytoid_dendritic_cell, Dendritic_cell, CD8_Tcell6, Endotherial_cell, Plasma_cell, CD8_Tcell3, CD4_Tcell5, CD8_Tcell5)

Testing group su007_post: (CD4_Tcell4) vs (Dendritic_cell, CD8_Tcell1, Bcell, CD8_Tcell2, CD4_Tcell5, CD4_Tcell1, CD4_Tcell3, CD8_Tcell4, Myofibroblast, Malignant_cell, CD8_Tcell3, Plasma_cell, NK_cell, Endotherial_cell, CD8_Tcell6, CD4_Tcell2, Macrophage, Fibroblast, CD8_Tcell5)

Testing group su010_post: (CD4_Tcell4) vs (CD4_Tcell2, CD4_Tcell1, Malignant_cell, CD8_Tcell5, CD8_Tcell2, CD8_Tcell3, Macrophage, CD4_Tcell5, CD8_Tcell1, NK_cell, Dendritic_cell, Fibroblast, CD4_Tcell3, CD8_Tcell6, CD8_Tcell4, Plasma_cell, Plasmacytoid_dendritic_cell)

Testing group su004_pre: (CD4_Tcell4) vs (CD8_Tcell2, CD8_Tcell3, CD4_Tcell5, CD4_Tcell3, CD8_Tcell1, CD4_Tcell1, CD4_Tcell2, CD8_Tcell4, Bcell, NK_cell, CD8_Tcell6, Dendritic_cell, Macrophage, Fibroblast, Endotherial_cell, Malignant_cell, Plasmacytoid_dendritic_cell, Myofibroblast, Plasma_cell)

Testing group su012_post: (CD4_Tcell4) vs (CD8_Tcell4, CD8_Tcell5, CD4_Tcell1, CD8_Tcell1, CD8_Tcell6, CD4_Tcell2, CD8_Tcell2, Macrophage, Malignant_cell, CD8_Tcell3, CD4_Tcell3, CD4_Tcell5, Bcell, Fibroblast, Plasma_cell, NK_cell, Plasmacytoid_dendritic_cell, Dendritic_cell)

Testing group su004_post: (CD4_Tcell4) vs (CD8_Tcell2, CD4_Tcell5, CD4_Tcell1, CD4_Tcell2, Macrophage, CD4_Tcell3, CD8_Tcell1, CD8_Tcell3, CD8_Tcell6, NK_cell, CD8_Tcell5, CD8_Tcell4, Dendritic_cell, Fibroblast, Plasmacytoid_dendritic_cell, Malignant_cell, Bcell, Myofibroblast, Plasma_cell, Endotherial_cell)

Testing group su003_post: (CD4_Tcell4) vs (Malignant_cell, Dendritic_cell, Fibroblast, CD4_Tcell1, Myofibroblast, Macrophage, CD8_Tcell4, CD4_Tcell2, CD8_Tcell6, Plasmacytoid_dendritic_cell, CD8_Tcell5, NK_cell, Endotherial_cell, CD8_Tcell3, CD8_Tcell1, CD8_Tcell2, Bcell, CD4_Tcell3, CD4_Tcell5, Plasma_cell)

Testing group su001_pre: (CD4_Tcell4) vs (Malignant_cell, CD4_Tcell5, Dendritic_cell, NK_cell, CD4_Tcell1, Macrophage, Endotherial_cell, CD4_Tcell2, Fibroblast, CD8_Tcell3, CD8_Tcell1, CD4_Tcell3, CD8_Tcell4, CD8_Tcell6, Plasmacytoid_dendritic_cell, CD8_Tcell2, Plasma_cell, Myofibroblast, CD8_Tcell5, Bcell)

Testing group su007_pre: (CD4_Tcell4) vs (CD4_Tcell1, CD8_Tcell2, CD4_Tcell3, CD8_Tcell1, CD8_Tcell4, CD4_Tcell5, CD8_Tcell3, CD4_Tcell2, NK_cell, CD8_Tcell5, CD8_Tcell6, Macrophage, Malignant_cell, Dendritic_cell, Plasma_cell, Plasmacytoid_dendritic_cell, Fibroblast, Myofibroblast, Endotherial_cell, Bcell)

Testing group su008_pre: (CD4_Tcell4) vs (Plasmacytoid_dendritic_cell, Plasma_cell, Dendritic_cell, Malignant_cell, Bcell, NK_cell, Macrophage, CD8_Tcell3, CD8_Tcell5, CD8_Tcell4, CD4_Tcell1, Fibroblast, Myofibroblast, CD8_Tcell1, CD8_Tcell2, CD4_Tcell5, CD8_Tcell6, CD4_Tcell2, CD4_Tcell3, Endotherial_cell)

Testing group su012_pre: (CD4_Tcell4) vs (CD4_Tcell1, Malignant_cell, Macrophage, CD4_Tcell3, CD8_Tcell4, CD8_Tcell1, CD4_Tcell5, NK_cell, Bcell, CD4_Tcell2, Plasma_cell, CD8_Tcell5, Fibroblast, CD8_Tcell2, CD8_Tcell3, CD8_Tcell6, Dendritic_cell, Plasmacytoid_dendritic_cell)

Testing group su005_pre: (CD4_Tcell4) vs (Macrophage, CD8_Tcell5, CD4_Tcell1, Dendritic_cell, CD8_Tcell4, Plasmacytoid_dendritic_cell, NK_cell, Malignant_cell, Plasma_cell, CD4_Tcell3, CD8_Tcell2, Bcell, CD8_Tcell3, Fibroblast, CD8_Tcell6, CD8_Tcell1, CD4_Tcell2, CD4_Tcell5, Endotherial_cell, Myofibroblast)

Testing group su005_post: (CD4_Tcell4) vs (CD4_Tcell1, CD8_Tcell3, CD8_Tcell6, CD4_Tcell5, CD8_Tcell2, CD4_Tcell3, CD8_Tcell1, CD8_Tcell4, NK_cell, CD4_Tcell2, CD8_Tcell5, Dendritic_cell, Bcell, Macrophage, Plasma_cell, Fibroblast, Plasmacytoid_dendritic_cell, Myofibroblast, Endotherial_cell, Malignant_cell)

Testing group su006_post: (CD4_Tcell4) vs (Macrophage, Plasma_cell, Dendritic_cell, CD8_Tcell5, Plasmacytoid_dendritic_cell, CD8_Tcell6, CD8_Tcell4, Bcell, Fibroblast, NK_cell, CD4_Tcell1, CD8_Tcell3, CD4_Tcell2, CD8_Tcell2, CD8_Tcell1, CD4_Tcell3, CD4_Tcell5, Malignant_cell, Myofibroblast, Endotherial_cell)

Testing group su009_pre: (CD4_Tcell4) vs (CD8_Tcell1, CD4_Tcell2, CD8_Tcell5, CD8_Tcell6, CD4_Tcell3, Malignant_cell, CD8_Tcell2, CD8_Tcell3, Dendritic_cell, CD4_Tcell1, NK_cell, CD4_Tcell5, Fibroblast, CD8_Tcell4, Plasmacytoid_dendritic_cell, Macrophage, Plasma_cell, Bcell, Myofibroblast)

Testing group su009_post: (CD4_Tcell4) vs (CD8_Tcell1, CD8_Tcell2, NK_cell, CD8_Tcell5, CD4_Tcell1, CD8_Tcell3, CD4_Tcell3, CD4_Tcell5, Malignant_cell, CD4_Tcell2, CD8_Tcell4, CD8_Tcell6, Fibroblast, Macrophage, Dendritic_cell, Plasma_cell, Bcell, Plasmacytoid_dendritic_cell, Myofibroblast)

Testing group su008_post: (CD4_Tcell4) vs (CD8_Tcell2, CD4_Tcell3, CD4_Tcell1, NK_cell, CD8_Tcell1, CD8_Tcell3, CD8_Tcell5, CD8_Tcell4, CD4_Tcell2, CD4_Tcell5, CD8_Tcell6, Fibroblast, Macrophage, Malignant_cell, Plasma_cell, Dendritic_cell, Plasmacytoid_dendritic_cell, Bcell, Endotherial_cell, Myofibroblast)

Testing group su006_pre: (CD4_Tcell4) vs (Plasma_cell, Macrophage, CD8_Tcell5, CD4_Tcell1, Bcell, Dendritic_cell, CD8_Tcell4, Plasmacytoid_dendritic_cell, Fibroblast, CD8_Tcell6, CD8_Tcell2, NK_cell, CD8_Tcell3, CD4_Tcell3, CD8_Tcell1, CD4_Tcell2, CD4_Tcell5, Endotherial_cell, Malignant_cell, Myofibroblast)

Testing group su001_post: (CD4_Tcell4) vs (CD8_Tcell1, CD4_Tcell2, CD8_Tcell3, CD4_Tcell3, CD4_Tcell5, CD8_Tcell6, CD8_Tcell2, NK_cell, CD4_Tcell1, Bcell, CD8_Tcell4, Macrophage, Dendritic_cell, Plasmacytoid_dendritic_cell, Plasma_cell, Fibroblast, Endotherial_cell, Myofibroblast, CD8_Tcell5, Malignant_cell)

Testing group su010_pre: (NK_cell) vs (CD8_Tcell2, CD4_Tcell3, Malignant_cell, CD4_Tcell1, Fibroblast, CD4_Tcell5, CD4_Tcell2, CD8_Tcell5, Plasma_cell, CD8_Tcell3, CD8_Tcell4, Dendritic_cell, CD8_Tcell6, Macrophage)

Testing group su002_pre: (NK_cell) vs (Macrophage, CD4_Tcell1, Dendritic_cell, Malignant_cell, CD8_Tcell2, CD8_Tcell6, CD4_Tcell4, CD4_Tcell5, Fibroblast, Myofibroblast, Plasma_cell, CD8_Tcell4, CD4_Tcell3, CD4_Tcell2, CD8_Tcell3, CD8_Tcell1, CD8_Tcell5, Endotherial_cell)

Testing group su002_post: (NK_cell) vs (CD8_Tcell4, CD4_Tcell2, CD4_Tcell1, CD8_Tcell1, CD8_Tcell3, CD4_Tcell3, CD8_Tcell2, CD4_Tcell4, Bcell, CD4_Tcell5, CD8_Tcell6, Plasma_cell, Fibroblast, Dendritic_cell, Endotherial_cell, Macrophage, Myofibroblast, Plasmacytoid_dendritic_cell)

Testing group su003_pre: (NK_cell) vs (CD8_Tcell2, CD4_Tcell2, CD8_Tcell4, Fibroblast, Malignant_cell, CD4_Tcell4, CD4_Tcell1, Macrophage, CD4_Tcell3, Myofibroblast, CD8_Tcell1, Plasmacytoid_dendritic_cell, Dendritic_cell, CD8_Tcell6, Endotherial_cell, Plasma_cell, CD8_Tcell3, CD4_Tcell5, CD8_Tcell5)

Testing group su007_post: (NK_cell) vs (Dendritic_cell, CD8_Tcell1, Bcell, CD8_Tcell2, CD4_Tcell5, CD4_Tcell1, CD4_Tcell3, CD8_Tcell4, CD4_Tcell4, Myofibroblast, Malignant_cell, CD8_Tcell3, Plasma_cell, Endotherial_cell, CD8_Tcell6, CD4_Tcell2, Macrophage, Fibroblast, CD8_Tcell5)

Testing group su010_post: (NK_cell) vs (CD4_Tcell2, CD4_Tcell1, Malignant_cell, CD8_Tcell5, CD8_Tcell2, CD8_Tcell3, Macrophage, CD4_Tcell5, CD4_Tcell4, CD8_Tcell1, Dendritic_cell, Fibroblast, CD4_Tcell3, CD8_Tcell6, CD8_Tcell4, Plasma_cell, Plasmacytoid_dendritic_cell)

Testing group su004_pre: (NK_cell) vs (CD8_Tcell2, CD8_Tcell3, CD4_Tcell4, CD4_Tcell5, CD4_Tcell3, CD8_Tcell1, CD4_Tcell1, CD4_Tcell2, CD8_Tcell4, Bcell, CD8_Tcell6, Dendritic_cell, Macrophage, Fibroblast, Endotherial_cell, Malignant_cell, Plasmacytoid_dendritic_cell, Myofibroblast, Plasma_cell)

Testing group su012_post: (NK_cell) vs (CD8_Tcell4, CD8_Tcell5, CD4_Tcell1, CD8_Tcell1, CD8_Tcell6, CD4_Tcell2, CD4_Tcell4, CD8_Tcell2, Macrophage, Malignant_cell, CD8_Tcell3, CD4_Tcell3, CD4_Tcell5, Bcell, Fibroblast, Plasma_cell, Plasmacytoid_dendritic_cell, Dendritic_cell)

Testing group su004_post: (NK_cell) vs (CD8_Tcell2, CD4_Tcell4, CD4_Tcell5, CD4_Tcell1, CD4_Tcell2, Macrophage, CD4_Tcell3, CD8_Tcell1, CD8_Tcell3, CD8_Tcell6, CD8_Tcell5, CD8_Tcell4, Dendritic_cell, Fibroblast, Plasmacytoid_dendritic_cell, Malignant_cell, Bcell, Myofibroblast, Plasma_cell, Endotherial_cell)

Testing group su003_post: (NK_cell) vs (Malignant_cell, Dendritic_cell, Fibroblast, CD4_Tcell1, Myofibroblast, Macrophage, CD8_Tcell4, CD4_Tcell2, CD8_Tcell6, Plasmacytoid_dendritic_cell, CD8_Tcell5, Endotherial_cell, CD8_Tcell3, CD4_Tcell4, CD8_Tcell1, CD8_Tcell2, Bcell, CD4_Tcell3, CD4_Tcell5, Plasma_cell)

Testing group su001_pre: (NK_cell) vs (Malignant_cell, CD4_Tcell5, Dendritic_cell, CD4_Tcell1, Macrophage, Endotherial_cell, CD4_Tcell2, Fibroblast, CD8_Tcell3, CD8_Tcell1, CD4_Tcell4, CD4_Tcell3, CD8_Tcell4, CD8_Tcell6, Plasmacytoid_dendritic_cell, CD8_Tcell2, Plasma_cell, Myofibroblast, CD8_Tcell5, Bcell)

Testing group su007_pre: (NK_cell) vs (CD4_Tcell1, CD8_Tcell2, CD4_Tcell3, CD4_Tcell4, CD8_Tcell1, CD8_Tcell4, CD4_Tcell5, CD8_Tcell3, CD4_Tcell2, CD8_Tcell5, CD8_Tcell6, Macrophage, Malignant_cell, Dendritic_cell, Plasma_cell, Plasmacytoid_dendritic_cell, Fibroblast, Myofibroblast, Endotherial_cell, Bcell)

Testing group su008_pre: (NK_cell) vs (Plasmacytoid_dendritic_cell, Plasma_cell, Dendritic_cell, Malignant_cell, Bcell, Macrophage, CD8_Tcell3, CD8_Tcell5, CD8_Tcell4, CD4_Tcell1, Fibroblast, Myofibroblast, CD8_Tcell1, CD8_Tcell2, CD4_Tcell5, CD8_Tcell6, CD4_Tcell2, CD4_Tcell3, CD4_Tcell4, Endotherial_cell)

Testing group su012_pre: (NK_cell) vs (CD4_Tcell1, Malignant_cell, CD4_Tcell4, Macrophage, CD4_Tcell3, CD8_Tcell4, CD8_Tcell1, CD4_Tcell5, Bcell, CD4_Tcell2, Plasma_cell, CD8_Tcell5, Fibroblast, CD8_Tcell2, CD8_Tcell3, CD8_Tcell6, Dendritic_cell, Plasmacytoid_dendritic_cell)

Testing group su005_pre: (NK_cell) vs (Macrophage, CD8_Tcell5, CD4_Tcell1, Dendritic_cell, CD8_Tcell4, Plasmacytoid_dendritic_cell, Malignant_cell, Plasma_cell, CD4_Tcell3, CD8_Tcell2, Bcell, CD4_Tcell4, CD8_Tcell3, Fibroblast, CD8_Tcell6, CD8_Tcell1, CD4_Tcell2, CD4_Tcell5, Endotherial_cell, Myofibroblast)

Testing group su005_post: (NK_cell) vs (CD4_Tcell1, CD8_Tcell3, CD8_Tcell6, CD4_Tcell5, CD4_Tcell4, CD8_Tcell2, CD4_Tcell3, CD8_Tcell1, CD8_Tcell4, CD4_Tcell2, CD8_Tcell5, Dendritic_cell, Bcell, Macrophage, Plasma_cell, Fibroblast, Plasmacytoid_dendritic_cell, Myofibroblast, Endotherial_cell, Malignant_cell)

Testing group su006_post: (NK_cell) vs (Macrophage, Plasma_cell, Dendritic_cell, CD8_Tcell5, Plasmacytoid_dendritic_cell, CD8_Tcell6, CD8_Tcell4, Bcell, Fibroblast, CD4_Tcell1, CD8_Tcell3, CD4_Tcell2, CD8_Tcell2, CD8_Tcell1, CD4_Tcell3, CD4_Tcell4, CD4_Tcell5, Malignant_cell, Myofibroblast, Endotherial_cell)

Testing group su009_pre: (NK_cell) vs (CD8_Tcell1, CD4_Tcell2, CD8_Tcell5, CD8_Tcell6, CD4_Tcell3, Malignant_cell, CD8_Tcell2, CD8_Tcell3, Dendritic_cell, CD4_Tcell4, CD4_Tcell1, CD4_Tcell5, Fibroblast, CD8_Tcell4, Plasmacytoid_dendritic_cell, Macrophage, Plasma_cell, Bcell, Myofibroblast)

Testing group su009_post: (NK_cell) vs (CD8_Tcell1, CD8_Tcell2, CD8_Tcell5, CD4_Tcell1, CD8_Tcell3, CD4_Tcell3, CD4_Tcell5, Malignant_cell, CD4_Tcell2, CD8_Tcell4, CD4_Tcell4, CD8_Tcell6, Fibroblast, Macrophage, Dendritic_cell, Plasma_cell, Bcell, Plasmacytoid_dendritic_cell, Myofibroblast)

Testing group su008_post: (NK_cell) vs (CD8_Tcell2, CD4_Tcell3, CD4_Tcell1, CD8_Tcell1, CD8_Tcell3, CD8_Tcell5, CD8_Tcell4, CD4_Tcell2, CD4_Tcell5, CD8_Tcell6, CD4_Tcell4, Fibroblast, Macrophage, Malignant_cell, Plasma_cell, Dendritic_cell, Plasmacytoid_dendritic_cell, Bcell, Endotherial_cell, Myofibroblast)

Testing group su006_pre: (NK_cell) vs (Plasma_cell, Macrophage, CD8_Tcell5, CD4_Tcell1, Bcell, Dendritic_cell, CD8_Tcell4, Plasmacytoid_dendritic_cell, Fibroblast, CD8_Tcell6, CD8_Tcell2, CD8_Tcell3, CD4_Tcell3, CD8_Tcell1, CD4_Tcell2, CD4_Tcell4, CD4_Tcell5, Endotherial_cell, Malignant_cell, Myofibroblast)

Testing group su001_post: (NK_cell) vs (CD8_Tcell1, CD4_Tcell2, CD8_Tcell3, CD4_Tcell3, CD4_Tcell5, CD4_Tcell4, CD8_Tcell6, CD8_Tcell2, CD4_Tcell1, Bcell, CD8_Tcell4, Macrophage, Dendritic_cell, Plasmacytoid_dendritic_cell, Plasma_cell, Fibroblast, Endotherial_cell, Myofibroblast, CD8_Tcell5, Malignant_cell)

Testing group su010_pre: (CD4_Tcell5) vs (CD8_Tcell2, CD4_Tcell3, Malignant_cell, CD4_Tcell1, NK_cell, Fibroblast, CD4_Tcell2, CD8_Tcell5, Plasma_cell, CD8_Tcell3, CD8_Tcell4, Dendritic_cell, CD8_Tcell6, Macrophage)

Testing group su002_pre: (CD4_Tcell5) vs (Macrophage, CD4_Tcell1, Dendritic_cell, NK_cell, Malignant_cell, CD8_Tcell2, CD8_Tcell6, CD4_Tcell4, Fibroblast, Myofibroblast, Plasma_cell, CD8_Tcell4, CD4_Tcell3, CD4_Tcell2, CD8_Tcell3, CD8_Tcell1, CD8_Tcell5, Endotherial_cell)

Testing group su002_post: (CD4_Tcell5) vs (CD8_Tcell4, CD4_Tcell2, CD4_Tcell1, CD8_Tcell1, CD8_Tcell3, CD4_Tcell3, CD8_Tcell2, CD4_Tcell4, Bcell, CD8_Tcell6, Plasma_cell, Fibroblast, NK_cell, Dendritic_cell, Endotherial_cell, Macrophage, Myofibroblast, Plasmacytoid_dendritic_cell)

Testing group su003_pre: (CD4_Tcell5) vs (CD8_Tcell2, CD4_Tcell2, CD8_Tcell4, Fibroblast, Malignant_cell, CD4_Tcell4, CD4_Tcell1, Macrophage, CD4_Tcell3, Myofibroblast, CD8_Tcell1, NK_cell, Plasmacytoid_dendritic_cell, Dendritic_cell, CD8_Tcell6, Endotherial_cell, Plasma_cell, CD8_Tcell3, CD8_Tcell5)

Testing group su007_post: (CD4_Tcell5) vs (Dendritic_cell, CD8_Tcell1, Bcell, CD8_Tcell2, CD4_Tcell1, CD4_Tcell3, CD8_Tcell4, CD4_Tcell4, Myofibroblast, Malignant_cell, CD8_Tcell3, Plasma_cell, NK_cell, Endotherial_cell, CD8_Tcell6, CD4_Tcell2, Macrophage, Fibroblast, CD8_Tcell5)

Testing group su010_post: (CD4_Tcell5) vs (CD4_Tcell2, CD4_Tcell1, Malignant_cell, CD8_Tcell5, CD8_Tcell2, CD8_Tcell3, Macrophage, CD4_Tcell4, CD8_Tcell1, NK_cell, Dendritic_cell, Fibroblast, CD4_Tcell3, CD8_Tcell6, CD8_Tcell4, Plasma_cell, Plasmacytoid_dendritic_cell)

Testing group su004_pre: (CD4_Tcell5) vs (CD8_Tcell2, CD8_Tcell3, CD4_Tcell4, CD4_Tcell3, CD8_Tcell1, CD4_Tcell1, CD4_Tcell2, CD8_Tcell4, Bcell, NK_cell, CD8_Tcell6, Dendritic_cell, Macrophage, Fibroblast, Endotherial_cell, Malignant_cell, Plasmacytoid_dendritic_cell, Myofibroblast, Plasma_cell)

Testing group su012_post: (CD4_Tcell5) vs (CD8_Tcell4, CD8_Tcell5, CD4_Tcell1, CD8_Tcell1, CD8_Tcell6, CD4_Tcell2, CD4_Tcell4, CD8_Tcell2, Macrophage, Malignant_cell, CD8_Tcell3, CD4_Tcell3, Bcell, Fibroblast, Plasma_cell, NK_cell, Plasmacytoid_dendritic_cell, Dendritic_cell)

Testing group su004_post: (CD4_Tcell5) vs (CD8_Tcell2, CD4_Tcell4, CD4_Tcell1, CD4_Tcell2, Macrophage, CD4_Tcell3, CD8_Tcell1, CD8_Tcell3, CD8_Tcell6, NK_cell, CD8_Tcell5, CD8_Tcell4, Dendritic_cell, Fibroblast, Plasmacytoid_dendritic_cell, Malignant_cell, Bcell, Myofibroblast, Plasma_cell, Endotherial_cell)

Testing group su003_post: (CD4_Tcell5) vs (Malignant_cell, Dendritic_cell, Fibroblast, CD4_Tcell1, Myofibroblast, Macrophage, CD8_Tcell4, CD4_Tcell2, CD8_Tcell6, Plasmacytoid_dendritic_cell, CD8_Tcell5, NK_cell, Endotherial_cell, CD8_Tcell3, CD4_Tcell4, CD8_Tcell1, CD8_Tcell2, Bcell, CD4_Tcell3, Plasma_cell)

Testing group su001_pre: (CD4_Tcell5) vs (Malignant_cell, Dendritic_cell, NK_cell, CD4_Tcell1, Macrophage, Endotherial_cell, CD4_Tcell2, Fibroblast, CD8_Tcell3, CD8_Tcell1, CD4_Tcell4, CD4_Tcell3, CD8_Tcell4, CD8_Tcell6, Plasmacytoid_dendritic_cell, CD8_Tcell2, Plasma_cell, Myofibroblast, CD8_Tcell5, Bcell)

Testing group su007_pre: (CD4_Tcell5) vs (CD4_Tcell1, CD8_Tcell2, CD4_Tcell3, CD4_Tcell4, CD8_Tcell1, CD8_Tcell4, CD8_Tcell3, CD4_Tcell2, NK_cell, CD8_Tcell5, CD8_Tcell6, Macrophage, Malignant_cell, Dendritic_cell, Plasma_cell, Plasmacytoid_dendritic_cell, Fibroblast, Myofibroblast, Endotherial_cell, Bcell)

Testing group su008_pre: (CD4_Tcell5) vs (Plasmacytoid_dendritic_cell, Plasma_cell, Dendritic_cell, Malignant_cell, Bcell, NK_cell, Macrophage, CD8_Tcell3, CD8_Tcell5, CD8_Tcell4, CD4_Tcell1, Fibroblast, Myofibroblast, CD8_Tcell1, CD8_Tcell2, CD8_Tcell6, CD4_Tcell2, CD4_Tcell3, CD4_Tcell4, Endotherial_cell)

Testing group su012_pre: (CD4_Tcell5) vs (CD4_Tcell1, Malignant_cell, CD4_Tcell4, Macrophage, CD4_Tcell3, CD8_Tcell4, CD8_Tcell1, NK_cell, Bcell, CD4_Tcell2, Plasma_cell, CD8_Tcell5, Fibroblast, CD8_Tcell2, CD8_Tcell3, CD8_Tcell6, Dendritic_cell, Plasmacytoid_dendritic_cell)

Testing group su005_pre: (CD4_Tcell5) vs (Macrophage, CD8_Tcell5, CD4_Tcell1, Dendritic_cell, CD8_Tcell4, Plasmacytoid_dendritic_cell, NK_cell, Malignant_cell, Plasma_cell, CD4_Tcell3, CD8_Tcell2, Bcell, CD4_Tcell4, CD8_Tcell3, Fibroblast, CD8_Tcell6, CD8_Tcell1, CD4_Tcell2, Endotherial_cell, Myofibroblast)

Testing group su005_post: (CD4_Tcell5) vs (CD4_Tcell1, CD8_Tcell3, CD8_Tcell6, CD4_Tcell4, CD8_Tcell2, CD4_Tcell3, CD8_Tcell1, CD8_Tcell4, NK_cell, CD4_Tcell2, CD8_Tcell5, Dendritic_cell, Bcell, Macrophage, Plasma_cell, Fibroblast, Plasmacytoid_dendritic_cell, Myofibroblast, Endotherial_cell, Malignant_cell)

Testing group su006_post: (CD4_Tcell5) vs (Macrophage, Plasma_cell, Dendritic_cell, CD8_Tcell5, Plasmacytoid_dendritic_cell, CD8_Tcell6, CD8_Tcell4, Bcell, Fibroblast, NK_cell, CD4_Tcell1, CD8_Tcell3, CD4_Tcell2, CD8_Tcell2, CD8_Tcell1, CD4_Tcell3, CD4_Tcell4, Malignant_cell, Myofibroblast, Endotherial_cell)

Testing group su009_pre: (CD4_Tcell5) vs (CD8_Tcell1, CD4_Tcell2, CD8_Tcell5, CD8_Tcell6, CD4_Tcell3, Malignant_cell, CD8_Tcell2, CD8_Tcell3, Dendritic_cell, CD4_Tcell4, CD4_Tcell1, NK_cell, Fibroblast, CD8_Tcell4, Plasmacytoid_dendritic_cell, Macrophage, Plasma_cell, Bcell, Myofibroblast)

Testing group su009_post: (CD4_Tcell5) vs (CD8_Tcell1, CD8_Tcell2, NK_cell, CD8_Tcell5, CD4_Tcell1, CD8_Tcell3, CD4_Tcell3, Malignant_cell, CD4_Tcell2, CD8_Tcell4, CD4_Tcell4, CD8_Tcell6, Fibroblast, Macrophage, Dendritic_cell, Plasma_cell, Bcell, Plasmacytoid_dendritic_cell, Myofibroblast)

Testing group su008_post: (CD4_Tcell5) vs (CD8_Tcell2, CD4_Tcell3, CD4_Tcell1, NK_cell, CD8_Tcell1, CD8_Tcell3, CD8_Tcell5, CD8_Tcell4, CD4_Tcell2, CD8_Tcell6, CD4_Tcell4, Fibroblast, Macrophage, Malignant_cell, Plasma_cell, Dendritic_cell, Plasmacytoid_dendritic_cell, Bcell, Endotherial_cell, Myofibroblast)

Testing group su006_pre: (CD4_Tcell5) vs (Plasma_cell, Macrophage, CD8_Tcell5, CD4_Tcell1, Bcell, Dendritic_cell, CD8_Tcell4, Plasmacytoid_dendritic_cell, Fibroblast, CD8_Tcell6, CD8_Tcell2, NK_cell, CD8_Tcell3, CD4_Tcell3, CD8_Tcell1, CD4_Tcell2, CD4_Tcell4, Endotherial_cell, Malignant_cell, Myofibroblast)

Testing group su001_post: (CD4_Tcell5) vs (CD8_Tcell1, CD4_Tcell2, CD8_Tcell3, CD4_Tcell3, CD4_Tcell4, CD8_Tcell6, CD8_Tcell2, NK_cell, CD4_Tcell1, Bcell, CD8_Tcell4, Macrophage, Dendritic_cell, Plasmacytoid_dendritic_cell, Plasma_cell, Fibroblast, Endotherial_cell, Myofibroblast, CD8_Tcell5, Malignant_cell)

Testing group su010_pre: (Dendritic_cell) vs (CD8_Tcell2, CD4_Tcell3, Malignant_cell, CD4_Tcell1, NK_cell, Fibroblast, CD4_Tcell5, CD4_Tcell2, CD8_Tcell5, Plasma_cell, CD8_Tcell3, CD8_Tcell4, CD8_Tcell6, Macrophage)

Testing group su002_pre: (Dendritic_cell) vs (Macrophage, CD4_Tcell1, NK_cell, Malignant_cell, CD8_Tcell2, CD8_Tcell6, CD4_Tcell4, CD4_Tcell5, Fibroblast, Myofibroblast, Plasma_cell, CD8_Tcell4, CD4_Tcell3, CD4_Tcell2, CD8_Tcell3, CD8_Tcell1, CD8_Tcell5, Endotherial_cell)

Testing group su002_post: (Dendritic_cell) vs (CD8_Tcell4, CD4_Tcell2, CD4_Tcell1, CD8_Tcell1, CD8_Tcell3, CD4_Tcell3, CD8_Tcell2, CD4_Tcell4, Bcell, CD4_Tcell5, CD8_Tcell6, Plasma_cell, Fibroblast, NK_cell, Endotherial_cell, Macrophage, Myofibroblast, Plasmacytoid_dendritic_cell)

Testing group su003_pre: (Dendritic_cell) vs (CD8_Tcell2, CD4_Tcell2, CD8_Tcell4, Fibroblast, Malignant_cell, CD4_Tcell4, CD4_Tcell1, Macrophage, CD4_Tcell3, Myofibroblast, CD8_Tcell1, NK_cell, Plasmacytoid_dendritic_cell, CD8_Tcell6, Endotherial_cell, Plasma_cell, CD8_Tcell3, CD4_Tcell5, CD8_Tcell5)

Testing group su007_post: (Dendritic_cell) vs (CD8_Tcell1, Bcell, CD8_Tcell2, CD4_Tcell5, CD4_Tcell1, CD4_Tcell3, CD8_Tcell4, CD4_Tcell4, Myofibroblast, Malignant_cell, CD8_Tcell3, Plasma_cell, NK_cell, Endotherial_cell, CD8_Tcell6, CD4_Tcell2, Macrophage, Fibroblast, CD8_Tcell5)

Testing group su010_post: (Dendritic_cell) vs (CD4_Tcell2, CD4_Tcell1, Malignant_cell, CD8_Tcell5, CD8_Tcell2, CD8_Tcell3, Macrophage, CD4_Tcell5, CD4_Tcell4, CD8_Tcell1, NK_cell, Fibroblast, CD4_Tcell3, CD8_Tcell6, CD8_Tcell4, Plasma_cell, Plasmacytoid_dendritic_cell)

Testing group su004_pre: (Dendritic_cell) vs (CD8_Tcell2, CD8_Tcell3, CD4_Tcell4, CD4_Tcell5, CD4_Tcell3, CD8_Tcell1, CD4_Tcell1, CD4_Tcell2, CD8_Tcell4, Bcell, NK_cell, CD8_Tcell6, Macrophage, Fibroblast, Endotherial_cell, Malignant_cell, Plasmacytoid_dendritic_cell, Myofibroblast, Plasma_cell)

Testing group su012_post: (Dendritic_cell) vs (CD8_Tcell4, CD8_Tcell5, CD4_Tcell1, CD8_Tcell1, CD8_Tcell6, CD4_Tcell2, CD4_Tcell4, CD8_Tcell2, Macrophage, Malignant_cell, CD8_Tcell3, CD4_Tcell3, CD4_Tcell5, Bcell, Fibroblast, Plasma_cell, NK_cell, Plasmacytoid_dendritic_cell)

Testing group su004_post: (Dendritic_cell) vs (CD8_Tcell2, CD4_Tcell4, CD4_Tcell5, CD4_Tcell1, CD4_Tcell2, Macrophage, CD4_Tcell3, CD8_Tcell1, CD8_Tcell3, CD8_Tcell6, NK_cell, CD8_Tcell5, CD8_Tcell4, Fibroblast, Plasmacytoid_dendritic_cell, Malignant_cell, Bcell, Myofibroblast, Plasma_cell, Endotherial_cell)

Testing group su003_post: (Dendritic_cell) vs (Malignant_cell, Fibroblast, CD4_Tcell1, Myofibroblast, Macrophage, CD8_Tcell4, CD4_Tcell2, CD8_Tcell6, Plasmacytoid_dendritic_cell, CD8_Tcell5, NK_cell, Endotherial_cell, CD8_Tcell3, CD4_Tcell4, CD8_Tcell1, CD8_Tcell2, Bcell, CD4_Tcell3, CD4_Tcell5, Plasma_cell)

Testing group su001_pre: (Dendritic_cell) vs (Malignant_cell, CD4_Tcell5, NK_cell, CD4_Tcell1, Macrophage, Endotherial_cell, CD4_Tcell2, Fibroblast, CD8_Tcell3, CD8_Tcell1, CD4_Tcell4, CD4_Tcell3, CD8_Tcell4, CD8_Tcell6, Plasmacytoid_dendritic_cell, CD8_Tcell2, Plasma_cell, Myofibroblast, CD8_Tcell5, Bcell)

Testing group su007_pre: (Dendritic_cell) vs (CD4_Tcell1, CD8_Tcell2, CD4_Tcell3, CD4_Tcell4, CD8_Tcell1, CD8_Tcell4, CD4_Tcell5, CD8_Tcell3, CD4_Tcell2, NK_cell, CD8_Tcell5, CD8_Tcell6, Macrophage, Malignant_cell, Plasma_cell, Plasmacytoid_dendritic_cell, Fibroblast, Myofibroblast, Endotherial_cell, Bcell)

Testing group su008_pre: (Dendritic_cell) vs (Plasmacytoid_dendritic_cell, Plasma_cell, Malignant_cell, Bcell, NK_cell, Macrophage, CD8_Tcell3, CD8_Tcell5, CD8_Tcell4, CD4_Tcell1, Fibroblast, Myofibroblast, CD8_Tcell1, CD8_Tcell2, CD4_Tcell5, CD8_Tcell6, CD4_Tcell2, CD4_Tcell3, CD4_Tcell4, Endotherial_cell)

Testing group su012_pre: (Dendritic_cell) vs (CD4_Tcell1, Malignant_cell, CD4_Tcell4, Macrophage, CD4_Tcell3, CD8_Tcell4, CD8_Tcell1, CD4_Tcell5, NK_cell, Bcell, CD4_Tcell2, Plasma_cell, CD8_Tcell5, Fibroblast, CD8_Tcell2, CD8_Tcell3, CD8_Tcell6, Plasmacytoid_dendritic_cell)

Testing group su005_pre: (Dendritic_cell) vs (Macrophage, CD8_Tcell5, CD4_Tcell1, CD8_Tcell4, Plasmacytoid_dendritic_cell, NK_cell, Malignant_cell, Plasma_cell, CD4_Tcell3, CD8_Tcell2, Bcell, CD4_Tcell4, CD8_Tcell3, Fibroblast, CD8_Tcell6, CD8_Tcell1, CD4_Tcell2, CD4_Tcell5, Endotherial_cell, Myofibroblast)

Testing group su005_post: (Dendritic_cell) vs (CD4_Tcell1, CD8_Tcell3, CD8_Tcell6, CD4_Tcell5, CD4_Tcell4, CD8_Tcell2, CD4_Tcell3, CD8_Tcell1, CD8_Tcell4, NK_cell, CD4_Tcell2, CD8_Tcell5, Bcell, Macrophage, Plasma_cell, Fibroblast, Plasmacytoid_dendritic_cell, Myofibroblast, Endotherial_cell, Malignant_cell)

Testing group su006_post: (Dendritic_cell) vs (Macrophage, Plasma_cell, CD8_Tcell5, Plasmacytoid_dendritic_cell, CD8_Tcell6, CD8_Tcell4, Bcell, Fibroblast, NK_cell, CD4_Tcell1, CD8_Tcell3, CD4_Tcell2, CD8_Tcell2, CD8_Tcell1, CD4_Tcell3, CD4_Tcell4, CD4_Tcell5, Malignant_cell, Myofibroblast, Endotherial_cell)

Testing group su009_pre: (Dendritic_cell) vs (CD8_Tcell1, CD4_Tcell2, CD8_Tcell5, CD8_Tcell6, CD4_Tcell3, Malignant_cell, CD8_Tcell2, CD8_Tcell3, CD4_Tcell4, CD4_Tcell1, NK_cell, CD4_Tcell5, Fibroblast, CD8_Tcell4, Plasmacytoid_dendritic_cell, Macrophage, Plasma_cell, Bcell, Myofibroblast)

Testing group su009_post: (Dendritic_cell) vs (CD8_Tcell1, CD8_Tcell2, NK_cell, CD8_Tcell5, CD4_Tcell1, CD8_Tcell3, CD4_Tcell3, CD4_Tcell5, Malignant_cell, CD4_Tcell2, CD8_Tcell4, CD4_Tcell4, CD8_Tcell6, Fibroblast, Macrophage, Plasma_cell, Bcell, Plasmacytoid_dendritic_cell, Myofibroblast)

Testing group su008_post: (Dendritic_cell) vs (CD8_Tcell2, CD4_Tcell3, CD4_Tcell1, NK_cell, CD8_Tcell1, CD8_Tcell3, CD8_Tcell5, CD8_Tcell4, CD4_Tcell2, CD4_Tcell5, CD8_Tcell6, CD4_Tcell4, Fibroblast, Macrophage, Malignant_cell, Plasma_cell, Plasmacytoid_dendritic_cell, Bcell, Endotherial_cell, Myofibroblast)

Testing group su006_pre: (Dendritic_cell) vs (Plasma_cell, Macrophage, CD8_Tcell5, CD4_Tcell1, Bcell, CD8_Tcell4, Plasmacytoid_dendritic_cell, Fibroblast, CD8_Tcell6, CD8_Tcell2, NK_cell, CD8_Tcell3, CD4_Tcell3, CD8_Tcell1, CD4_Tcell2, CD4_Tcell4, CD4_Tcell5, Endotherial_cell, Malignant_cell, Myofibroblast)

Testing group su001_post: (Dendritic_cell) vs (CD8_Tcell1, CD4_Tcell2, CD8_Tcell3, CD4_Tcell3, CD4_Tcell5, CD4_Tcell4, CD8_Tcell6, CD8_Tcell2, NK_cell, CD4_Tcell1, Bcell, CD8_Tcell4, Macrophage, Plasmacytoid_dendritic_cell, Plasma_cell, Fibroblast, Endotherial_cell, Myofibroblast, CD8_Tcell5, Malignant_cell)

Testing group su010_pre: (CD8_Tcell3) vs (CD8_Tcell2, CD4_Tcell3, Malignant_cell, CD4_Tcell1, NK_cell, Fibroblast, CD4_Tcell5, CD4_Tcell2, CD8_Tcell5, Plasma_cell, CD8_Tcell4, Dendritic_cell, CD8_Tcell6, Macrophage)

Testing group su002_pre: (CD8_Tcell3) vs (Macrophage, CD4_Tcell1, Dendritic_cell, NK_cell, Malignant_cell, CD8_Tcell2, CD8_Tcell6, CD4_Tcell4, CD4_Tcell5, Fibroblast, Myofibroblast, Plasma_cell, CD8_Tcell4, CD4_Tcell3, CD4_Tcell2, CD8_Tcell1, CD8_Tcell5, Endotherial_cell)

Testing group su002_post: (CD8_Tcell3) vs (CD8_Tcell4, CD4_Tcell2, CD4_Tcell1, CD8_Tcell1, CD4_Tcell3, CD8_Tcell2, CD4_Tcell4, Bcell, CD4_Tcell5, CD8_Tcell6, Plasma_cell, Fibroblast, NK_cell, Dendritic_cell, Endotherial_cell, Macrophage, Myofibroblast, Plasmacytoid_dendritic_cell)

Testing group su003_pre: (CD8_Tcell3) vs (CD8_Tcell2, CD4_Tcell2, CD8_Tcell4, Fibroblast, Malignant_cell, CD4_Tcell4, CD4_Tcell1, Macrophage, CD4_Tcell3, Myofibroblast, CD8_Tcell1, NK_cell, Plasmacytoid_dendritic_cell, Dendritic_cell, CD8_Tcell6, Endotherial_cell, Plasma_cell, CD4_Tcell5, CD8_Tcell5)

Testing group su007_post: (CD8_Tcell3) vs (Dendritic_cell, CD8_Tcell1, Bcell, CD8_Tcell2, CD4_Tcell5, CD4_Tcell1, CD4_Tcell3, CD8_Tcell4, CD4_Tcell4, Myofibroblast, Malignant_cell, Plasma_cell, NK_cell, Endotherial_cell, CD8_Tcell6, CD4_Tcell2, Macrophage, Fibroblast, CD8_Tcell5)

Testing group su010_post: (CD8_Tcell3) vs (CD4_Tcell2, CD4_Tcell1, Malignant_cell, CD8_Tcell5, CD8_Tcell2, Macrophage, CD4_Tcell5, CD4_Tcell4, CD8_Tcell1, NK_cell, Dendritic_cell, Fibroblast, CD4_Tcell3, CD8_Tcell6, CD8_Tcell4, Plasma_cell, Plasmacytoid_dendritic_cell)

Testing group su004_pre: (CD8_Tcell3) vs (CD8_Tcell2, CD4_Tcell4, CD4_Tcell5, CD4_Tcell3, CD8_Tcell1, CD4_Tcell1, CD4_Tcell2, CD8_Tcell4, Bcell, NK_cell, CD8_Tcell6, Dendritic_cell, Macrophage, Fibroblast, Endotherial_cell, Malignant_cell, Plasmacytoid_dendritic_cell, Myofibroblast, Plasma_cell)

Testing group su012_post: (CD8_Tcell3) vs (CD8_Tcell4, CD8_Tcell5, CD4_Tcell1, CD8_Tcell1, CD8_Tcell6, CD4_Tcell2, CD4_Tcell4, CD8_Tcell2, Macrophage, Malignant_cell, CD4_Tcell3, CD4_Tcell5, Bcell, Fibroblast, Plasma_cell, NK_cell, Plasmacytoid_dendritic_cell, Dendritic_cell)

Testing group su004_post: (CD8_Tcell3) vs (CD8_Tcell2, CD4_Tcell4, CD4_Tcell5, CD4_Tcell1, CD4_Tcell2, Macrophage, CD4_Tcell3, CD8_Tcell1, CD8_Tcell6, NK_cell, CD8_Tcell5, CD8_Tcell4, Dendritic_cell, Fibroblast, Plasmacytoid_dendritic_cell, Malignant_cell, Bcell, Myofibroblast, Plasma_cell, Endotherial_cell)

Testing group su003_post: (CD8_Tcell3) vs (Malignant_cell, Dendritic_cell, Fibroblast, CD4_Tcell1, Myofibroblast, Macrophage, CD8_Tcell4, CD4_Tcell2, CD8_Tcell6, Plasmacytoid_dendritic_cell, CD8_Tcell5, NK_cell, Endotherial_cell, CD4_Tcell4, CD8_Tcell1, CD8_Tcell2, Bcell, CD4_Tcell3, CD4_Tcell5, Plasma_cell)

Testing group su001_pre: (CD8_Tcell3) vs (Malignant_cell, CD4_Tcell5, Dendritic_cell, NK_cell, CD4_Tcell1, Macrophage, Endotherial_cell, CD4_Tcell2, Fibroblast, CD8_Tcell1, CD4_Tcell4, CD4_Tcell3, CD8_Tcell4, CD8_Tcell6, Plasmacytoid_dendritic_cell, CD8_Tcell2, Plasma_cell, Myofibroblast, CD8_Tcell5, Bcell)

Testing group su007_pre: (CD8_Tcell3) vs (CD4_Tcell1, CD8_Tcell2, CD4_Tcell3, CD4_Tcell4, CD8_Tcell1, CD8_Tcell4, CD4_Tcell5, CD4_Tcell2, NK_cell, CD8_Tcell5, CD8_Tcell6, Macrophage, Malignant_cell, Dendritic_cell, Plasma_cell, Plasmacytoid_dendritic_cell, Fibroblast, Myofibroblast, Endotherial_cell, Bcell)

Testing group su008_pre: (CD8_Tcell3) vs (Plasmacytoid_dendritic_cell, Plasma_cell, Dendritic_cell, Malignant_cell, Bcell, NK_cell, Macrophage, CD8_Tcell5, CD8_Tcell4, CD4_Tcell1, Fibroblast, Myofibroblast, CD8_Tcell1, CD8_Tcell2, CD4_Tcell5, CD8_Tcell6, CD4_Tcell2, CD4_Tcell3, CD4_Tcell4, Endotherial_cell)

Testing group su012_pre: (CD8_Tcell3) vs (CD4_Tcell1, Malignant_cell, CD4_Tcell4, Macrophage, CD4_Tcell3, CD8_Tcell4, CD8_Tcell1, CD4_Tcell5, NK_cell, Bcell, CD4_Tcell2, Plasma_cell, CD8_Tcell5, Fibroblast, CD8_Tcell2, CD8_Tcell6, Dendritic_cell, Plasmacytoid_dendritic_cell)

Testing group su005_pre: (CD8_Tcell3) vs (Macrophage, CD8_Tcell5, CD4_Tcell1, Dendritic_cell, CD8_Tcell4, Plasmacytoid_dendritic_cell, NK_cell, Malignant_cell, Plasma_cell, CD4_Tcell3, CD8_Tcell2, Bcell, CD4_Tcell4, Fibroblast, CD8_Tcell6, CD8_Tcell1, CD4_Tcell2, CD4_Tcell5, Endotherial_cell, Myofibroblast)

Testing group su005_post: (CD8_Tcell3) vs (CD4_Tcell1, CD8_Tcell6, CD4_Tcell5, CD4_Tcell4, CD8_Tcell2, CD4_Tcell3, CD8_Tcell1, CD8_Tcell4, NK_cell, CD4_Tcell2, CD8_Tcell5, Dendritic_cell, Bcell, Macrophage, Plasma_cell, Fibroblast, Plasmacytoid_dendritic_cell, Myofibroblast, Endotherial_cell, Malignant_cell)

Testing group su006_post: (CD8_Tcell3) vs (Macrophage, Plasma_cell, Dendritic_cell, CD8_Tcell5, Plasmacytoid_dendritic_cell, CD8_Tcell6, CD8_Tcell4, Bcell, Fibroblast, NK_cell, CD4_Tcell1, CD4_Tcell2, CD8_Tcell2, CD8_Tcell1, CD4_Tcell3, CD4_Tcell4, CD4_Tcell5, Malignant_cell, Myofibroblast, Endotherial_cell)

Testing group su009_pre: (CD8_Tcell3) vs (CD8_Tcell1, CD4_Tcell2, CD8_Tcell5, CD8_Tcell6, CD4_Tcell3, Malignant_cell, CD8_Tcell2, Dendritic_cell, CD4_Tcell4, CD4_Tcell1, NK_cell, CD4_Tcell5, Fibroblast, CD8_Tcell4, Plasmacytoid_dendritic_cell, Macrophage, Plasma_cell, Bcell, Myofibroblast)

Testing group su009_post: (CD8_Tcell3) vs (CD8_Tcell1, CD8_Tcell2, NK_cell, CD8_Tcell5, CD4_Tcell1, CD4_Tcell3, CD4_Tcell5, Malignant_cell, CD4_Tcell2, CD8_Tcell4, CD4_Tcell4, CD8_Tcell6, Fibroblast, Macrophage, Dendritic_cell, Plasma_cell, Bcell, Plasmacytoid_dendritic_cell, Myofibroblast)

Testing group su008_post: (CD8_Tcell3) vs (CD8_Tcell2, CD4_Tcell3, CD4_Tcell1, NK_cell, CD8_Tcell1, CD8_Tcell5, CD8_Tcell4, CD4_Tcell2, CD4_Tcell5, CD8_Tcell6, CD4_Tcell4, Fibroblast, Macrophage, Malignant_cell, Plasma_cell, Dendritic_cell, Plasmacytoid_dendritic_cell, Bcell, Endotherial_cell, Myofibroblast)

Testing group su006_pre: (CD8_Tcell3) vs (Plasma_cell, Macrophage, CD8_Tcell5, CD4_Tcell1, Bcell, Dendritic_cell, CD8_Tcell4, Plasmacytoid_dendritic_cell, Fibroblast, CD8_Tcell6, CD8_Tcell2, NK_cell, CD4_Tcell3, CD8_Tcell1, CD4_Tcell2, CD4_Tcell4, CD4_Tcell5, Endotherial_cell, Malignant_cell, Myofibroblast)

Testing group su001_post: (CD8_Tcell3) vs (CD8_Tcell1, CD4_Tcell2, CD4_Tcell3, CD4_Tcell5, CD4_Tcell4, CD8_Tcell6, CD8_Tcell2, NK_cell, CD4_Tcell1, Bcell, CD8_Tcell4, Macrophage, Dendritic_cell, Plasmacytoid_dendritic_cell, Plasma_cell, Fibroblast, Endotherial_cell, Myofibroblast, CD8_Tcell5, Malignant_cell)

Testing group su010_pre: (Macrophage) vs (CD8_Tcell2, CD4_Tcell3, Malignant_cell, CD4_Tcell1, NK_cell, Fibroblast, CD4_Tcell5, CD4_Tcell2, CD8_Tcell5, Plasma_cell, CD8_Tcell3, CD8_Tcell4, Dendritic_cell, CD8_Tcell6)

Testing group su002_pre: (Macrophage) vs (CD4_Tcell1, Dendritic_cell, NK_cell, Malignant_cell, CD8_Tcell2, CD8_Tcell6, CD4_Tcell4, CD4_Tcell5, Fibroblast, Myofibroblast, Plasma_cell, CD8_Tcell4, CD4_Tcell3, CD4_Tcell2, CD8_Tcell3, CD8_Tcell1, CD8_Tcell5, Endotherial_cell)

Testing group su002_post: (Macrophage) vs (CD8_Tcell4, CD4_Tcell2, CD4_Tcell1, CD8_Tcell1, CD8_Tcell3, CD4_Tcell3, CD8_Tcell2, CD4_Tcell4, Bcell, CD4_Tcell5, CD8_Tcell6, Plasma_cell, Fibroblast, NK_cell, Dendritic_cell, Endotherial_cell, Myofibroblast, Plasmacytoid_dendritic_cell)

Testing group su003_pre: (Macrophage) vs (CD8_Tcell2, CD4_Tcell2, CD8_Tcell4, Fibroblast, Malignant_cell, CD4_Tcell4, CD4_Tcell1, CD4_Tcell3, Myofibroblast, CD8_Tcell1, NK_cell, Plasmacytoid_dendritic_cell, Dendritic_cell, CD8_Tcell6, Endotherial_cell, Plasma_cell, CD8_Tcell3, CD4_Tcell5, CD8_Tcell5)

Testing group su007_post: (Macrophage) vs (Dendritic_cell, CD8_Tcell1, Bcell, CD8_Tcell2, CD4_Tcell5, CD4_Tcell1, CD4_Tcell3, CD8_Tcell4, CD4_Tcell4, Myofibroblast, Malignant_cell, CD8_Tcell3, Plasma_cell, NK_cell, Endotherial_cell, CD8_Tcell6, CD4_Tcell2, Fibroblast, CD8_Tcell5)

Testing group su010_post: (Macrophage) vs (CD4_Tcell2, CD4_Tcell1, Malignant_cell, CD8_Tcell5, CD8_Tcell2, CD8_Tcell3, CD4_Tcell5, CD4_Tcell4, CD8_Tcell1, NK_cell, Dendritic_cell, Fibroblast, CD4_Tcell3, CD8_Tcell6, CD8_Tcell4, Plasma_cell, Plasmacytoid_dendritic_cell)

Testing group su004_pre: (Macrophage) vs (CD8_Tcell2, CD8_Tcell3, CD4_Tcell4, CD4_Tcell5, CD4_Tcell3, CD8_Tcell1, CD4_Tcell1, CD4_Tcell2, CD8_Tcell4, Bcell, NK_cell, CD8_Tcell6, Dendritic_cell, Fibroblast, Endotherial_cell, Malignant_cell, Plasmacytoid_dendritic_cell, Myofibroblast, Plasma_cell)

Testing group su012_post: (Macrophage) vs (CD8_Tcell4, CD8_Tcell5, CD4_Tcell1, CD8_Tcell1, CD8_Tcell6, CD4_Tcell2, CD4_Tcell4, CD8_Tcell2, Malignant_cell, CD8_Tcell3, CD4_Tcell3, CD4_Tcell5, Bcell, Fibroblast, Plasma_cell, NK_cell, Plasmacytoid_dendritic_cell, Dendritic_cell)

Testing group su004_post: (Macrophage) vs (CD8_Tcell2, CD4_Tcell4, CD4_Tcell5, CD4_Tcell1, CD4_Tcell2, CD4_Tcell3, CD8_Tcell1, CD8_Tcell3, CD8_Tcell6, NK_cell, CD8_Tcell5, CD8_Tcell4, Dendritic_cell, Fibroblast, Plasmacytoid_dendritic_cell, Malignant_cell, Bcell, Myofibroblast, Plasma_cell, Endotherial_cell)

Testing group su003_post: (Macrophage) vs (Malignant_cell, Dendritic_cell, Fibroblast, CD4_Tcell1, Myofibroblast, CD8_Tcell4, CD4_Tcell2, CD8_Tcell6, Plasmacytoid_dendritic_cell, CD8_Tcell5, NK_cell, Endotherial_cell, CD8_Tcell3, CD4_Tcell4, CD8_Tcell1, CD8_Tcell2, Bcell, CD4_Tcell3, CD4_Tcell5, Plasma_cell)

Testing group su001_pre: (Macrophage) vs (Malignant_cell, CD4_Tcell5, Dendritic_cell, NK_cell, CD4_Tcell1, Endotherial_cell, CD4_Tcell2, Fibroblast, CD8_Tcell3, CD8_Tcell1, CD4_Tcell4, CD4_Tcell3, CD8_Tcell4, CD8_Tcell6, Plasmacytoid_dendritic_cell, CD8_Tcell2, Plasma_cell, Myofibroblast, CD8_Tcell5, Bcell)

Testing group su007_pre: (Macrophage) vs (CD4_Tcell1, CD8_Tcell2, CD4_Tcell3, CD4_Tcell4, CD8_Tcell1, CD8_Tcell4, CD4_Tcell5, CD8_Tcell3, CD4_Tcell2, NK_cell, CD8_Tcell5, CD8_Tcell6, Malignant_cell, Dendritic_cell, Plasma_cell, Plasmacytoid_dendritic_cell, Fibroblast, Myofibroblast, Endotherial_cell, Bcell)

Testing group su008_pre: (Macrophage) vs (Plasmacytoid_dendritic_cell, Plasma_cell, Dendritic_cell, Malignant_cell, Bcell, NK_cell, CD8_Tcell3, CD8_Tcell5, CD8_Tcell4, CD4_Tcell1, Fibroblast, Myofibroblast, CD8_Tcell1, CD8_Tcell2, CD4_Tcell5, CD8_Tcell6, CD4_Tcell2, CD4_Tcell3, CD4_Tcell4, Endotherial_cell)

Testing group su012_pre: (Macrophage) vs (CD4_Tcell1, Malignant_cell, CD4_Tcell4, CD4_Tcell3, CD8_Tcell4, CD8_Tcell1, CD4_Tcell5, NK_cell, Bcell, CD4_Tcell2, Plasma_cell, CD8_Tcell5, Fibroblast, CD8_Tcell2, CD8_Tcell3, CD8_Tcell6, Dendritic_cell, Plasmacytoid_dendritic_cell)

Testing group su005_pre: (Macrophage) vs (CD8_Tcell5, CD4_Tcell1, Dendritic_cell, CD8_Tcell4, Plasmacytoid_dendritic_cell, NK_cell, Malignant_cell, Plasma_cell, CD4_Tcell3, CD8_Tcell2, Bcell, CD4_Tcell4, CD8_Tcell3, Fibroblast, CD8_Tcell6, CD8_Tcell1, CD4_Tcell2, CD4_Tcell5, Endotherial_cell, Myofibroblast)

Testing group su005_post: (Macrophage) vs (CD4_Tcell1, CD8_Tcell3, CD8_Tcell6, CD4_Tcell5, CD4_Tcell4, CD8_Tcell2, CD4_Tcell3, CD8_Tcell1, CD8_Tcell4, NK_cell, CD4_Tcell2, CD8_Tcell5, Dendritic_cell, Bcell, Plasma_cell, Fibroblast, Plasmacytoid_dendritic_cell, Myofibroblast, Endotherial_cell, Malignant_cell)

Testing group su006_post: (Macrophage) vs (Plasma_cell, Dendritic_cell, CD8_Tcell5, Plasmacytoid_dendritic_cell, CD8_Tcell6, CD8_Tcell4, Bcell, Fibroblast, NK_cell, CD4_Tcell1, CD8_Tcell3, CD4_Tcell2, CD8_Tcell2, CD8_Tcell1, CD4_Tcell3, CD4_Tcell4, CD4_Tcell5, Malignant_cell, Myofibroblast, Endotherial_cell)

Testing group su009_pre: (Macrophage) vs (CD8_Tcell1, CD4_Tcell2, CD8_Tcell5, CD8_Tcell6, CD4_Tcell3, Malignant_cell, CD8_Tcell2, CD8_Tcell3, Dendritic_cell, CD4_Tcell4, CD4_Tcell1, NK_cell, CD4_Tcell5, Fibroblast, CD8_Tcell4, Plasmacytoid_dendritic_cell, Plasma_cell, Bcell, Myofibroblast)

Testing group su009_post: (Macrophage) vs (CD8_Tcell1, CD8_Tcell2, NK_cell, CD8_Tcell5, CD4_Tcell1, CD8_Tcell3, CD4_Tcell3, CD4_Tcell5, Malignant_cell, CD4_Tcell2, CD8_Tcell4, CD4_Tcell4, CD8_Tcell6, Fibroblast, Dendritic_cell, Plasma_cell, Bcell, Plasmacytoid_dendritic_cell, Myofibroblast)

Testing group su008_post: (Macrophage) vs (CD8_Tcell2, CD4_Tcell3, CD4_Tcell1, NK_cell, CD8_Tcell1, CD8_Tcell3, CD8_Tcell5, CD8_Tcell4, CD4_Tcell2, CD4_Tcell5, CD8_Tcell6, CD4_Tcell4, Fibroblast, Malignant_cell, Plasma_cell, Dendritic_cell, Plasmacytoid_dendritic_cell, Bcell, Endotherial_cell, Myofibroblast)

Testing group su006_pre: (Macrophage) vs (Plasma_cell, CD8_Tcell5, CD4_Tcell1, Bcell, Dendritic_cell, CD8_Tcell4, Plasmacytoid_dendritic_cell, Fibroblast, CD8_Tcell6, CD8_Tcell2, NK_cell, CD8_Tcell3, CD4_Tcell3, CD8_Tcell1, CD4_Tcell2, CD4_Tcell4, CD4_Tcell5, Endotherial_cell, Malignant_cell, Myofibroblast)

Testing group su001_post: (Macrophage) vs (CD8_Tcell1, CD4_Tcell2, CD8_Tcell3, CD4_Tcell3, CD4_Tcell5, CD4_Tcell4, CD8_Tcell6, CD8_Tcell2, NK_cell, CD4_Tcell1, Bcell, CD8_Tcell4, Dendritic_cell, Plasmacytoid_dendritic_cell, Plasma_cell, Fibroblast, Endotherial_cell, Myofibroblast, CD8_Tcell5, Malignant_cell)

Testing group su010_pre: (CD8_Tcell4) vs (CD8_Tcell2, CD4_Tcell3, Malignant_cell, CD4_Tcell1, NK_cell, Fibroblast, CD4_Tcell5, CD4_Tcell2, CD8_Tcell5, Plasma_cell, CD8_Tcell3, Dendritic_cell, CD8_Tcell6, Macrophage)

Testing group su002_pre: (CD8_Tcell4) vs (Macrophage, CD4_Tcell1, Dendritic_cell, NK_cell, Malignant_cell, CD8_Tcell2, CD8_Tcell6, CD4_Tcell4, CD4_Tcell5, Fibroblast, Myofibroblast, Plasma_cell, CD4_Tcell3, CD4_Tcell2, CD8_Tcell3, CD8_Tcell1, CD8_Tcell5, Endotherial_cell)

Testing group su002_post: (CD8_Tcell4) vs (CD4_Tcell2, CD4_Tcell1, CD8_Tcell1, CD8_Tcell3, CD4_Tcell3, CD8_Tcell2, CD4_Tcell4, Bcell, CD4_Tcell5, CD8_Tcell6, Plasma_cell, Fibroblast, NK_cell, Dendritic_cell, Endotherial_cell, Macrophage, Myofibroblast, Plasmacytoid_dendritic_cell)

Testing group su003_pre: (CD8_Tcell4) vs (CD8_Tcell2, CD4_Tcell2, Fibroblast, Malignant_cell, CD4_Tcell4, CD4_Tcell1, Macrophage, CD4_Tcell3, Myofibroblast, CD8_Tcell1, NK_cell, Plasmacytoid_dendritic_cell, Dendritic_cell, CD8_Tcell6, Endotherial_cell, Plasma_cell, CD8_Tcell3, CD4_Tcell5, CD8_Tcell5)

Testing group su007_post: (CD8_Tcell4) vs (Dendritic_cell, CD8_Tcell1, Bcell, CD8_Tcell2, CD4_Tcell5, CD4_Tcell1, CD4_Tcell3, CD4_Tcell4, Myofibroblast, Malignant_cell, CD8_Tcell3, Plasma_cell, NK_cell, Endotherial_cell, CD8_Tcell6, CD4_Tcell2, Macrophage, Fibroblast, CD8_Tcell5)

Testing group su010_post: (CD8_Tcell4) vs (CD4_Tcell2, CD4_Tcell1, Malignant_cell, CD8_Tcell5, CD8_Tcell2, CD8_Tcell3, Macrophage, CD4_Tcell5, CD4_Tcell4, CD8_Tcell1, NK_cell, Dendritic_cell, Fibroblast, CD4_Tcell3, CD8_Tcell6, Plasma_cell, Plasmacytoid_dendritic_cell)

Testing group su004_pre: (CD8_Tcell4) vs (CD8_Tcell2, CD8_Tcell3, CD4_Tcell4, CD4_Tcell5, CD4_Tcell3, CD8_Tcell1, CD4_Tcell1, CD4_Tcell2, Bcell, NK_cell, CD8_Tcell6, Dendritic_cell, Macrophage, Fibroblast, Endotherial_cell, Malignant_cell, Plasmacytoid_dendritic_cell, Myofibroblast, Plasma_cell)

Testing group su012_post: (CD8_Tcell4) vs (CD8_Tcell5, CD4_Tcell1, CD8_Tcell1, CD8_Tcell6, CD4_Tcell2, CD4_Tcell4, CD8_Tcell2, Macrophage, Malignant_cell, CD8_Tcell3, CD4_Tcell3, CD4_Tcell5, Bcell, Fibroblast, Plasma_cell, NK_cell, Plasmacytoid_dendritic_cell, Dendritic_cell)

Testing group su004_post: (CD8_Tcell4) vs (CD8_Tcell2, CD4_Tcell4, CD4_Tcell5, CD4_Tcell1, CD4_Tcell2, Macrophage, CD4_Tcell3, CD8_Tcell1, CD8_Tcell3, CD8_Tcell6, NK_cell, CD8_Tcell5, Dendritic_cell, Fibroblast, Plasmacytoid_dendritic_cell, Malignant_cell, Bcell, Myofibroblast, Plasma_cell, Endotherial_cell)

Testing group su003_post: (CD8_Tcell4) vs (Malignant_cell, Dendritic_cell, Fibroblast, CD4_Tcell1, Myofibroblast, Macrophage, CD4_Tcell2, CD8_Tcell6, Plasmacytoid_dendritic_cell, CD8_Tcell5, NK_cell, Endotherial_cell, CD8_Tcell3, CD4_Tcell4, CD8_Tcell1, CD8_Tcell2, Bcell, CD4_Tcell3, CD4_Tcell5, Plasma_cell)

Testing group su001_pre: (CD8_Tcell4) vs (Malignant_cell, CD4_Tcell5, Dendritic_cell, NK_cell, CD4_Tcell1, Macrophage, Endotherial_cell, CD4_Tcell2, Fibroblast, CD8_Tcell3, CD8_Tcell1, CD4_Tcell4, CD4_Tcell3, CD8_Tcell6, Plasmacytoid_dendritic_cell, CD8_Tcell2, Plasma_cell, Myofibroblast, CD8_Tcell5, Bcell)

Testing group su007_pre: (CD8_Tcell4) vs (CD4_Tcell1, CD8_Tcell2, CD4_Tcell3, CD4_Tcell4, CD8_Tcell1, CD4_Tcell5, CD8_Tcell3, CD4_Tcell2, NK_cell, CD8_Tcell5, CD8_Tcell6, Macrophage, Malignant_cell, Dendritic_cell, Plasma_cell, Plasmacytoid_dendritic_cell, Fibroblast, Myofibroblast, Endotherial_cell, Bcell)

Testing group su008_pre: (CD8_Tcell4) vs (Plasmacytoid_dendritic_cell, Plasma_cell, Dendritic_cell, Malignant_cell, Bcell, NK_cell, Macrophage, CD8_Tcell3, CD8_Tcell5, CD4_Tcell1, Fibroblast, Myofibroblast, CD8_Tcell1, CD8_Tcell2, CD4_Tcell5, CD8_Tcell6, CD4_Tcell2, CD4_Tcell3, CD4_Tcell4, Endotherial_cell)

Testing group su012_pre: (CD8_Tcell4) vs (CD4_Tcell1, Malignant_cell, CD4_Tcell4, Macrophage, CD4_Tcell3, CD8_Tcell1, CD4_Tcell5, NK_cell, Bcell, CD4_Tcell2, Plasma_cell, CD8_Tcell5, Fibroblast, CD8_Tcell2, CD8_Tcell3, CD8_Tcell6, Dendritic_cell, Plasmacytoid_dendritic_cell)

Testing group su005_pre: (CD8_Tcell4) vs (Macrophage, CD8_Tcell5, CD4_Tcell1, Dendritic_cell, Plasmacytoid_dendritic_cell, NK_cell, Malignant_cell, Plasma_cell, CD4_Tcell3, CD8_Tcell2, Bcell, CD4_Tcell4, CD8_Tcell3, Fibroblast, CD8_Tcell6, CD8_Tcell1, CD4_Tcell2, CD4_Tcell5, Endotherial_cell, Myofibroblast)

Testing group su005_post: (CD8_Tcell4) vs (CD4_Tcell1, CD8_Tcell3, CD8_Tcell6, CD4_Tcell5, CD4_Tcell4, CD8_Tcell2, CD4_Tcell3, CD8_Tcell1, NK_cell, CD4_Tcell2, CD8_Tcell5, Dendritic_cell, Bcell, Macrophage, Plasma_cell, Fibroblast, Plasmacytoid_dendritic_cell, Myofibroblast, Endotherial_cell, Malignant_cell)

Testing group su006_post: (CD8_Tcell4) vs (Macrophage, Plasma_cell, Dendritic_cell, CD8_Tcell5, Plasmacytoid_dendritic_cell, CD8_Tcell6, Bcell, Fibroblast, NK_cell, CD4_Tcell1, CD8_Tcell3, CD4_Tcell2, CD8_Tcell2, CD8_Tcell1, CD4_Tcell3, CD4_Tcell4, CD4_Tcell5, Malignant_cell, Myofibroblast, Endotherial_cell)

Testing group su009_pre: (CD8_Tcell4) vs (CD8_Tcell1, CD4_Tcell2, CD8_Tcell5, CD8_Tcell6, CD4_Tcell3, Malignant_cell, CD8_Tcell2, CD8_Tcell3, Dendritic_cell, CD4_Tcell4, CD4_Tcell1, NK_cell, CD4_Tcell5, Fibroblast, Plasmacytoid_dendritic_cell, Macrophage, Plasma_cell, Bcell, Myofibroblast)

Testing group su009_post: (CD8_Tcell4) vs (CD8_Tcell1, CD8_Tcell2, NK_cell, CD8_Tcell5, CD4_Tcell1, CD8_Tcell3, CD4_Tcell3, CD4_Tcell5, Malignant_cell, CD4_Tcell2, CD4_Tcell4, CD8_Tcell6, Fibroblast, Macrophage, Dendritic_cell, Plasma_cell, Bcell, Plasmacytoid_dendritic_cell, Myofibroblast)

Testing group su008_post: (CD8_Tcell4) vs (CD8_Tcell2, CD4_Tcell3, CD4_Tcell1, NK_cell, CD8_Tcell1, CD8_Tcell3, CD8_Tcell5, CD4_Tcell2, CD4_Tcell5, CD8_Tcell6, CD4_Tcell4, Fibroblast, Macrophage, Malignant_cell, Plasma_cell, Dendritic_cell, Plasmacytoid_dendritic_cell, Bcell, Endotherial_cell, Myofibroblast)

Testing group su006_pre: (CD8_Tcell4) vs (Plasma_cell, Macrophage, CD8_Tcell5, CD4_Tcell1, Bcell, Dendritic_cell, Plasmacytoid_dendritic_cell, Fibroblast, CD8_Tcell6, CD8_Tcell2, NK_cell, CD8_Tcell3, CD4_Tcell3, CD8_Tcell1, CD4_Tcell2, CD4_Tcell4, CD4_Tcell5, Endotherial_cell, Malignant_cell, Myofibroblast)

Testing group su001_post: (CD8_Tcell4) vs (CD8_Tcell1, CD4_Tcell2, CD8_Tcell3, CD4_Tcell3, CD4_Tcell5, CD4_Tcell4, CD8_Tcell6, CD8_Tcell2, NK_cell, CD4_Tcell1, Bcell, Macrophage, Dendritic_cell, Plasmacytoid_dendritic_cell, Plasma_cell, Fibroblast, Endotherial_cell, Myofibroblast, CD8_Tcell5, Malignant_cell)

Testing group su010_pre: (CD8_Tcell5) vs (CD8_Tcell2, CD4_Tcell3, Malignant_cell, CD4_Tcell1, NK_cell, Fibroblast, CD4_Tcell5, CD4_Tcell2, Plasma_cell, CD8_Tcell3, CD8_Tcell4, Dendritic_cell, CD8_Tcell6, Macrophage)

Testing group su002_pre: (CD8_Tcell5) vs (Macrophage, CD4_Tcell1, Dendritic_cell, NK_cell, Malignant_cell, CD8_Tcell2, CD8_Tcell6, CD4_Tcell4, CD4_Tcell5, Fibroblast, Myofibroblast, Plasma_cell, CD8_Tcell4, CD4_Tcell3, CD4_Tcell2, CD8_Tcell3, CD8_Tcell1, Endotherial_cell)

Warning message:
“Identity: CD8_Tcell5 not present in group su002_post. Skipping su002_post”
Testing group su003_pre: (CD8_Tcell5) vs (CD8_Tcell2, CD4_Tcell2, CD8_Tcell4, Fibroblast, Malignant_cell, CD4_Tcell4, CD4_Tcell1, Macrophage, CD4_Tcell3, Myofibroblast, CD8_Tcell1, NK_cell, Plasmacytoid_dendritic_cell, Dendritic_cell, CD8_Tcell6, Endotherial_cell, Plasma_cell, CD8_Tcell3, CD4_Tcell5)

Testing group su007_post: (CD8_Tcell5) vs (Dendritic_cell, CD8_Tcell1, Bcell, CD8_Tcell2, CD4_Tcell5, CD4_Tcell1, CD4_Tcell3, CD8_Tcell4, CD4_Tcell4, Myofibroblast, Malignant_cell, CD8_Tcell3, Plasma_cell, NK_cell, Endotherial_cell, CD8_Tcell6, CD4_Tcell2, Macrophage, Fibroblast)

Testing group su010_post: (CD8_Tcell5) vs (CD4_Tcell2, CD4_Tcell1, Malignant_cell, CD8_Tcell2, CD8_Tcell3, Macrophage, CD4_Tcell5, CD4_Tcell4, CD8_Tcell1, NK_cell, Dendritic_cell, Fibroblast, CD4_Tcell3, CD8_Tcell6, CD8_Tcell4, Plasma_cell, Plasmacytoid_dendritic_cell)

Warning message:
“Identity: CD8_Tcell5 not present in group su004_pre. Skipping su004_pre”
Testing group su012_post: (CD8_Tcell5) vs (CD8_Tcell4, CD4_Tcell1, CD8_Tcell1, CD8_Tcell6, CD4_Tcell2, CD4_Tcell4, CD8_Tcell2, Macrophage, Malignant_cell, CD8_Tcell3, CD4_Tcell3, CD4_Tcell5, Bcell, Fibroblast, Plasma_cell, NK_cell, Plasmacytoid_dendritic_cell, Dendritic_cell)

Testing group su004_post: (CD8_Tcell5) vs (CD8_Tcell2, CD4_Tcell4, CD4_Tcell5, CD4_Tcell1, CD4_Tcell2, Macrophage, CD4_Tcell3, CD8_Tcell1, CD8_Tcell3, CD8_Tcell6, NK_cell, CD8_Tcell4, Dendritic_cell, Fibroblast, Plasmacytoid_dendritic_cell, Malignant_cell, Bcell, Myofibroblast, Plasma_cell, Endotherial_cell)

Testing group su003_post: (CD8_Tcell5) vs (Malignant_cell, Dendritic_cell, Fibroblast, CD4_Tcell1, Myofibroblast, Macrophage, CD8_Tcell4, CD4_Tcell2, CD8_Tcell6, Plasmacytoid_dendritic_cell, NK_cell, Endotherial_cell, CD8_Tcell3, CD4_Tcell4, CD8_Tcell1, CD8_Tcell2, Bcell, CD4_Tcell3, CD4_Tcell5, Plasma_cell)

Testing group su001_pre: (CD8_Tcell5) vs (Malignant_cell, CD4_Tcell5, Dendritic_cell, NK_cell, CD4_Tcell1, Macrophage, Endotherial_cell, CD4_Tcell2, Fibroblast, CD8_Tcell3, CD8_Tcell1, CD4_Tcell4, CD4_Tcell3, CD8_Tcell4, CD8_Tcell6, Plasmacytoid_dendritic_cell, CD8_Tcell2, Plasma_cell, Myofibroblast, Bcell)

Testing group su007_pre: (CD8_Tcell5) vs (CD4_Tcell1, CD8_Tcell2, CD4_Tcell3, CD4_Tcell4, CD8_Tcell1, CD8_Tcell4, CD4_Tcell5, CD8_Tcell3, CD4_Tcell2, NK_cell, CD8_Tcell6, Macrophage, Malignant_cell, Dendritic_cell, Plasma_cell, Plasmacytoid_dendritic_cell, Fibroblast, Myofibroblast, Endotherial_cell, Bcell)

Testing group su008_pre: (CD8_Tcell5) vs (Plasmacytoid_dendritic_cell, Plasma_cell, Dendritic_cell, Malignant_cell, Bcell, NK_cell, Macrophage, CD8_Tcell3, CD8_Tcell4, CD4_Tcell1, Fibroblast, Myofibroblast, CD8_Tcell1, CD8_Tcell2, CD4_Tcell5, CD8_Tcell6, CD4_Tcell2, CD4_Tcell3, CD4_Tcell4, Endotherial_cell)

Testing group su012_pre: (CD8_Tcell5) vs (CD4_Tcell1, Malignant_cell, CD4_Tcell4, Macrophage, CD4_Tcell3, CD8_Tcell4, CD8_Tcell1, CD4_Tcell5, NK_cell, Bcell, CD4_Tcell2, Plasma_cell, Fibroblast, CD8_Tcell2, CD8_Tcell3, CD8_Tcell6, Dendritic_cell, Plasmacytoid_dendritic_cell)

Testing group su005_pre: (CD8_Tcell5) vs (Macrophage, CD4_Tcell1, Dendritic_cell, CD8_Tcell4, Plasmacytoid_dendritic_cell, NK_cell, Malignant_cell, Plasma_cell, CD4_Tcell3, CD8_Tcell2, Bcell, CD4_Tcell4, CD8_Tcell3, Fibroblast, CD8_Tcell6, CD8_Tcell1, CD4_Tcell2, CD4_Tcell5, Endotherial_cell, Myofibroblast)

Testing group su005_post: (CD8_Tcell5) vs (CD4_Tcell1, CD8_Tcell3, CD8_Tcell6, CD4_Tcell5, CD4_Tcell4, CD8_Tcell2, CD4_Tcell3, CD8_Tcell1, CD8_Tcell4, NK_cell, CD4_Tcell2, Dendritic_cell, Bcell, Macrophage, Plasma_cell, Fibroblast, Plasmacytoid_dendritic_cell, Myofibroblast, Endotherial_cell, Malignant_cell)

Testing group su006_post: (CD8_Tcell5) vs (Macrophage, Plasma_cell, Dendritic_cell, Plasmacytoid_dendritic_cell, CD8_Tcell6, CD8_Tcell4, Bcell, Fibroblast, NK_cell, CD4_Tcell1, CD8_Tcell3, CD4_Tcell2, CD8_Tcell2, CD8_Tcell1, CD4_Tcell3, CD4_Tcell4, CD4_Tcell5, Malignant_cell, Myofibroblast, Endotherial_cell)

Testing group su009_pre: (CD8_Tcell5) vs (CD8_Tcell1, CD4_Tcell2, CD8_Tcell6, CD4_Tcell3, Malignant_cell, CD8_Tcell2, CD8_Tcell3, Dendritic_cell, CD4_Tcell4, CD4_Tcell1, NK_cell, CD4_Tcell5, Fibroblast, CD8_Tcell4, Plasmacytoid_dendritic_cell, Macrophage, Plasma_cell, Bcell, Myofibroblast)

Testing group su009_post: (CD8_Tcell5) vs (CD8_Tcell1, CD8_Tcell2, NK_cell, CD4_Tcell1, CD8_Tcell3, CD4_Tcell3, CD4_Tcell5, Malignant_cell, CD4_Tcell2, CD8_Tcell4, CD4_Tcell4, CD8_Tcell6, Fibroblast, Macrophage, Dendritic_cell, Plasma_cell, Bcell, Plasmacytoid_dendritic_cell, Myofibroblast)

Testing group su008_post: (CD8_Tcell5) vs (CD8_Tcell2, CD4_Tcell3, CD4_Tcell1, NK_cell, CD8_Tcell1, CD8_Tcell3, CD8_Tcell4, CD4_Tcell2, CD4_Tcell5, CD8_Tcell6, CD4_Tcell4, Fibroblast, Macrophage, Malignant_cell, Plasma_cell, Dendritic_cell, Plasmacytoid_dendritic_cell, Bcell, Endotherial_cell, Myofibroblast)

Testing group su006_pre: (CD8_Tcell5) vs (Plasma_cell, Macrophage, CD4_Tcell1, Bcell, Dendritic_cell, CD8_Tcell4, Plasmacytoid_dendritic_cell, Fibroblast, CD8_Tcell6, CD8_Tcell2, NK_cell, CD8_Tcell3, CD4_Tcell3, CD8_Tcell1, CD4_Tcell2, CD4_Tcell4, CD4_Tcell5, Endotherial_cell, Malignant_cell, Myofibroblast)

Testing group su001_post: (CD8_Tcell5) vs (CD8_Tcell1, CD4_Tcell2, CD8_Tcell3, CD4_Tcell3, CD4_Tcell5, CD4_Tcell4, CD8_Tcell6, CD8_Tcell2, NK_cell, CD4_Tcell1, Bcell, CD8_Tcell4, Macrophage, Dendritic_cell, Plasmacytoid_dendritic_cell, Plasma_cell, Fibroblast, Endotherial_cell, Myofibroblast, Malignant_cell)

Warning message in max(nchar(aux)):
“no non-missing arguments to max; returning -Inf”
Testing group su010_pre: (CD8_Tcell6) vs (CD8_Tcell2, CD4_Tcell3, Malignant_cell, CD4_Tcell1, NK_cell, Fibroblast, CD4_Tcell5, CD4_Tcell2, CD8_Tcell5, Plasma_cell, CD8_Tcell3, CD8_Tcell4, Dendritic_cell, Macrophage)

Testing group su002_pre: (CD8_Tcell6) vs (Macrophage, CD4_Tcell1, Dendritic_cell, NK_cell, Malignant_cell, CD8_Tcell2, CD4_Tcell4, CD4_Tcell5, Fibroblast, Myofibroblast, Plasma_cell, CD8_Tcell4, CD4_Tcell3, CD4_Tcell2, CD8_Tcell3, CD8_Tcell1, CD8_Tcell5, Endotherial_cell)

Testing group su002_post: (CD8_Tcell6) vs (CD8_Tcell4, CD4_Tcell2, CD4_Tcell1, CD8_Tcell1, CD8_Tcell3, CD4_Tcell3, CD8_Tcell2, CD4_Tcell4, Bcell, CD4_Tcell5, Plasma_cell, Fibroblast, NK_cell, Dendritic_cell, Endotherial_cell, Macrophage, Myofibroblast, Plasmacytoid_dendritic_cell)

Testing group su003_pre: (CD8_Tcell6) vs (CD8_Tcell2, CD4_Tcell2, CD8_Tcell4, Fibroblast, Malignant_cell, CD4_Tcell4, CD4_Tcell1, Macrophage, CD4_Tcell3, Myofibroblast, CD8_Tcell1, NK_cell, Plasmacytoid_dendritic_cell, Dendritic_cell, Endotherial_cell, Plasma_cell, CD8_Tcell3, CD4_Tcell5, CD8_Tcell5)

Testing group su007_post: (CD8_Tcell6) vs (Dendritic_cell, CD8_Tcell1, Bcell, CD8_Tcell2, CD4_Tcell5, CD4_Tcell1, CD4_Tcell3, CD8_Tcell4, CD4_Tcell4, Myofibroblast, Malignant_cell, CD8_Tcell3, Plasma_cell, NK_cell, Endotherial_cell, CD4_Tcell2, Macrophage, Fibroblast, CD8_Tcell5)

Testing group su010_post: (CD8_Tcell6) vs (CD4_Tcell2, CD4_Tcell1, Malignant_cell, CD8_Tcell5, CD8_Tcell2, CD8_Tcell3, Macrophage, CD4_Tcell5, CD4_Tcell4, CD8_Tcell1, NK_cell, Dendritic_cell, Fibroblast, CD4_Tcell3, CD8_Tcell4, Plasma_cell, Plasmacytoid_dendritic_cell)

Testing group su004_pre: (CD8_Tcell6) vs (CD8_Tcell2, CD8_Tcell3, CD4_Tcell4, CD4_Tcell5, CD4_Tcell3, CD8_Tcell1, CD4_Tcell1, CD4_Tcell2, CD8_Tcell4, Bcell, NK_cell, Dendritic_cell, Macrophage, Fibroblast, Endotherial_cell, Malignant_cell, Plasmacytoid_dendritic_cell, Myofibroblast, Plasma_cell)

Testing group su012_post: (CD8_Tcell6) vs (CD8_Tcell4, CD8_Tcell5, CD4_Tcell1, CD8_Tcell1, CD4_Tcell2, CD4_Tcell4, CD8_Tcell2, Macrophage, Malignant_cell, CD8_Tcell3, CD4_Tcell3, CD4_Tcell5, Bcell, Fibroblast, Plasma_cell, NK_cell, Plasmacytoid_dendritic_cell, Dendritic_cell)

Testing group su004_post: (CD8_Tcell6) vs (CD8_Tcell2, CD4_Tcell4, CD4_Tcell5, CD4_Tcell1, CD4_Tcell2, Macrophage, CD4_Tcell3, CD8_Tcell1, CD8_Tcell3, NK_cell, CD8_Tcell5, CD8_Tcell4, Dendritic_cell, Fibroblast, Plasmacytoid_dendritic_cell, Malignant_cell, Bcell, Myofibroblast, Plasma_cell, Endotherial_cell)

Testing group su003_post: (CD8_Tcell6) vs (Malignant_cell, Dendritic_cell, Fibroblast, CD4_Tcell1, Myofibroblast, Macrophage, CD8_Tcell4, CD4_Tcell2, Plasmacytoid_dendritic_cell, CD8_Tcell5, NK_cell, Endotherial_cell, CD8_Tcell3, CD4_Tcell4, CD8_Tcell1, CD8_Tcell2, Bcell, CD4_Tcell3, CD4_Tcell5, Plasma_cell)

Testing group su001_pre: (CD8_Tcell6) vs (Malignant_cell, CD4_Tcell5, Dendritic_cell, NK_cell, CD4_Tcell1, Macrophage, Endotherial_cell, CD4_Tcell2, Fibroblast, CD8_Tcell3, CD8_Tcell1, CD4_Tcell4, CD4_Tcell3, CD8_Tcell4, Plasmacytoid_dendritic_cell, CD8_Tcell2, Plasma_cell, Myofibroblast, CD8_Tcell5, Bcell)

Testing group su007_pre: (CD8_Tcell6) vs (CD4_Tcell1, CD8_Tcell2, CD4_Tcell3, CD4_Tcell4, CD8_Tcell1, CD8_Tcell4, CD4_Tcell5, CD8_Tcell3, CD4_Tcell2, NK_cell, CD8_Tcell5, Macrophage, Malignant_cell, Dendritic_cell, Plasma_cell, Plasmacytoid_dendritic_cell, Fibroblast, Myofibroblast, Endotherial_cell, Bcell)

Testing group su008_pre: (CD8_Tcell6) vs (Plasmacytoid_dendritic_cell, Plasma_cell, Dendritic_cell, Malignant_cell, Bcell, NK_cell, Macrophage, CD8_Tcell3, CD8_Tcell5, CD8_Tcell4, CD4_Tcell1, Fibroblast, Myofibroblast, CD8_Tcell1, CD8_Tcell2, CD4_Tcell5, CD4_Tcell2, CD4_Tcell3, CD4_Tcell4, Endotherial_cell)

Testing group su012_pre: (CD8_Tcell6) vs (CD4_Tcell1, Malignant_cell, CD4_Tcell4, Macrophage, CD4_Tcell3, CD8_Tcell4, CD8_Tcell1, CD4_Tcell5, NK_cell, Bcell, CD4_Tcell2, Plasma_cell, CD8_Tcell5, Fibroblast, CD8_Tcell2, CD8_Tcell3, Dendritic_cell, Plasmacytoid_dendritic_cell)

Testing group su005_pre: (CD8_Tcell6) vs (Macrophage, CD8_Tcell5, CD4_Tcell1, Dendritic_cell, CD8_Tcell4, Plasmacytoid_dendritic_cell, NK_cell, Malignant_cell, Plasma_cell, CD4_Tcell3, CD8_Tcell2, Bcell, CD4_Tcell4, CD8_Tcell3, Fibroblast, CD8_Tcell1, CD4_Tcell2, CD4_Tcell5, Endotherial_cell, Myofibroblast)

Testing group su005_post: (CD8_Tcell6) vs (CD4_Tcell1, CD8_Tcell3, CD4_Tcell5, CD4_Tcell4, CD8_Tcell2, CD4_Tcell3, CD8_Tcell1, CD8_Tcell4, NK_cell, CD4_Tcell2, CD8_Tcell5, Dendritic_cell, Bcell, Macrophage, Plasma_cell, Fibroblast, Plasmacytoid_dendritic_cell, Myofibroblast, Endotherial_cell, Malignant_cell)

Testing group su006_post: (CD8_Tcell6) vs (Macrophage, Plasma_cell, Dendritic_cell, CD8_Tcell5, Plasmacytoid_dendritic_cell, CD8_Tcell4, Bcell, Fibroblast, NK_cell, CD4_Tcell1, CD8_Tcell3, CD4_Tcell2, CD8_Tcell2, CD8_Tcell1, CD4_Tcell3, CD4_Tcell4, CD4_Tcell5, Malignant_cell, Myofibroblast, Endotherial_cell)

Testing group su009_pre: (CD8_Tcell6) vs (CD8_Tcell1, CD4_Tcell2, CD8_Tcell5, CD4_Tcell3, Malignant_cell, CD8_Tcell2, CD8_Tcell3, Dendritic_cell, CD4_Tcell4, CD4_Tcell1, NK_cell, CD4_Tcell5, Fibroblast, CD8_Tcell4, Plasmacytoid_dendritic_cell, Macrophage, Plasma_cell, Bcell, Myofibroblast)

Testing group su009_post: (CD8_Tcell6) vs (CD8_Tcell1, CD8_Tcell2, NK_cell, CD8_Tcell5, CD4_Tcell1, CD8_Tcell3, CD4_Tcell3, CD4_Tcell5, Malignant_cell, CD4_Tcell2, CD8_Tcell4, CD4_Tcell4, Fibroblast, Macrophage, Dendritic_cell, Plasma_cell, Bcell, Plasmacytoid_dendritic_cell, Myofibroblast)

Testing group su008_post: (CD8_Tcell6) vs (CD8_Tcell2, CD4_Tcell3, CD4_Tcell1, NK_cell, CD8_Tcell1, CD8_Tcell3, CD8_Tcell5, CD8_Tcell4, CD4_Tcell2, CD4_Tcell5, CD4_Tcell4, Fibroblast, Macrophage, Malignant_cell, Plasma_cell, Dendritic_cell, Plasmacytoid_dendritic_cell, Bcell, Endotherial_cell, Myofibroblast)

Testing group su006_pre: (CD8_Tcell6) vs (Plasma_cell, Macrophage, CD8_Tcell5, CD4_Tcell1, Bcell, Dendritic_cell, CD8_Tcell4, Plasmacytoid_dendritic_cell, Fibroblast, CD8_Tcell2, NK_cell, CD8_Tcell3, CD4_Tcell3, CD8_Tcell1, CD4_Tcell2, CD4_Tcell4, CD4_Tcell5, Endotherial_cell, Malignant_cell, Myofibroblast)

Testing group su001_post: (CD8_Tcell6) vs (CD8_Tcell1, CD4_Tcell2, CD8_Tcell3, CD4_Tcell3, CD4_Tcell5, CD4_Tcell4, CD8_Tcell2, NK_cell, CD4_Tcell1, Bcell, CD8_Tcell4, Macrophage, Dendritic_cell, Plasmacytoid_dendritic_cell, Plasma_cell, Fibroblast, Endotherial_cell, Myofibroblast, CD8_Tcell5, Malignant_cell)

Testing group su010_pre: (Fibroblast) vs (CD8_Tcell2, CD4_Tcell3, Malignant_cell, CD4_Tcell1, NK_cell, CD4_Tcell5, CD4_Tcell2, CD8_Tcell5, Plasma_cell, CD8_Tcell3, CD8_Tcell4, Dendritic_cell, CD8_Tcell6, Macrophage)

Testing group su002_pre: (Fibroblast) vs (Macrophage, CD4_Tcell1, Dendritic_cell, NK_cell, Malignant_cell, CD8_Tcell2, CD8_Tcell6, CD4_Tcell4, CD4_Tcell5, Myofibroblast, Plasma_cell, CD8_Tcell4, CD4_Tcell3, CD4_Tcell2, CD8_Tcell3, CD8_Tcell1, CD8_Tcell5, Endotherial_cell)

Testing group su002_post: (Fibroblast) vs (CD8_Tcell4, CD4_Tcell2, CD4_Tcell1, CD8_Tcell1, CD8_Tcell3, CD4_Tcell3, CD8_Tcell2, CD4_Tcell4, Bcell, CD4_Tcell5, CD8_Tcell6, Plasma_cell, NK_cell, Dendritic_cell, Endotherial_cell, Macrophage, Myofibroblast, Plasmacytoid_dendritic_cell)

Testing group su003_pre: (Fibroblast) vs (CD8_Tcell2, CD4_Tcell2, CD8_Tcell4, Malignant_cell, CD4_Tcell4, CD4_Tcell1, Macrophage, CD4_Tcell3, Myofibroblast, CD8_Tcell1, NK_cell, Plasmacytoid_dendritic_cell, Dendritic_cell, CD8_Tcell6, Endotherial_cell, Plasma_cell, CD8_Tcell3, CD4_Tcell5, CD8_Tcell5)

Testing group su007_post: (Fibroblast) vs (Dendritic_cell, CD8_Tcell1, Bcell, CD8_Tcell2, CD4_Tcell5, CD4_Tcell1, CD4_Tcell3, CD8_Tcell4, CD4_Tcell4, Myofibroblast, Malignant_cell, CD8_Tcell3, Plasma_cell, NK_cell, Endotherial_cell, CD8_Tcell6, CD4_Tcell2, Macrophage, CD8_Tcell5)

Testing group su010_post: (Fibroblast) vs (CD4_Tcell2, CD4_Tcell1, Malignant_cell, CD8_Tcell5, CD8_Tcell2, CD8_Tcell3, Macrophage, CD4_Tcell5, CD4_Tcell4, CD8_Tcell1, NK_cell, Dendritic_cell, CD4_Tcell3, CD8_Tcell6, CD8_Tcell4, Plasma_cell, Plasmacytoid_dendritic_cell)

Testing group su004_pre: (Fibroblast) vs (CD8_Tcell2, CD8_Tcell3, CD4_Tcell4, CD4_Tcell5, CD4_Tcell3, CD8_Tcell1, CD4_Tcell1, CD4_Tcell2, CD8_Tcell4, Bcell, NK_cell, CD8_Tcell6, Dendritic_cell, Macrophage, Endotherial_cell, Malignant_cell, Plasmacytoid_dendritic_cell, Myofibroblast, Plasma_cell)

Testing group su012_post: (Fibroblast) vs (CD8_Tcell4, CD8_Tcell5, CD4_Tcell1, CD8_Tcell1, CD8_Tcell6, CD4_Tcell2, CD4_Tcell4, CD8_Tcell2, Macrophage, Malignant_cell, CD8_Tcell3, CD4_Tcell3, CD4_Tcell5, Bcell, Plasma_cell, NK_cell, Plasmacytoid_dendritic_cell, Dendritic_cell)

Testing group su004_post: (Fibroblast) vs (CD8_Tcell2, CD4_Tcell4, CD4_Tcell5, CD4_Tcell1, CD4_Tcell2, Macrophage, CD4_Tcell3, CD8_Tcell1, CD8_Tcell3, CD8_Tcell6, NK_cell, CD8_Tcell5, CD8_Tcell4, Dendritic_cell, Plasmacytoid_dendritic_cell, Malignant_cell, Bcell, Myofibroblast, Plasma_cell, Endotherial_cell)

Testing group su003_post: (Fibroblast) vs (Malignant_cell, Dendritic_cell, CD4_Tcell1, Myofibroblast, Macrophage, CD8_Tcell4, CD4_Tcell2, CD8_Tcell6, Plasmacytoid_dendritic_cell, CD8_Tcell5, NK_cell, Endotherial_cell, CD8_Tcell3, CD4_Tcell4, CD8_Tcell1, CD8_Tcell2, Bcell, CD4_Tcell3, CD4_Tcell5, Plasma_cell)

Testing group su001_pre: (Fibroblast) vs (Malignant_cell, CD4_Tcell5, Dendritic_cell, NK_cell, CD4_Tcell1, Macrophage, Endotherial_cell, CD4_Tcell2, CD8_Tcell3, CD8_Tcell1, CD4_Tcell4, CD4_Tcell3, CD8_Tcell4, CD8_Tcell6, Plasmacytoid_dendritic_cell, CD8_Tcell2, Plasma_cell, Myofibroblast, CD8_Tcell5, Bcell)

Testing group su007_pre: (Fibroblast) vs (CD4_Tcell1, CD8_Tcell2, CD4_Tcell3, CD4_Tcell4, CD8_Tcell1, CD8_Tcell4, CD4_Tcell5, CD8_Tcell3, CD4_Tcell2, NK_cell, CD8_Tcell5, CD8_Tcell6, Macrophage, Malignant_cell, Dendritic_cell, Plasma_cell, Plasmacytoid_dendritic_cell, Myofibroblast, Endotherial_cell, Bcell)

Testing group su008_pre: (Fibroblast) vs (Plasmacytoid_dendritic_cell, Plasma_cell, Dendritic_cell, Malignant_cell, Bcell, NK_cell, Macrophage, CD8_Tcell3, CD8_Tcell5, CD8_Tcell4, CD4_Tcell1, Myofibroblast, CD8_Tcell1, CD8_Tcell2, CD4_Tcell5, CD8_Tcell6, CD4_Tcell2, CD4_Tcell3, CD4_Tcell4, Endotherial_cell)

Testing group su012_pre: (Fibroblast) vs (CD4_Tcell1, Malignant_cell, CD4_Tcell4, Macrophage, CD4_Tcell3, CD8_Tcell4, CD8_Tcell1, CD4_Tcell5, NK_cell, Bcell, CD4_Tcell2, Plasma_cell, CD8_Tcell5, CD8_Tcell2, CD8_Tcell3, CD8_Tcell6, Dendritic_cell, Plasmacytoid_dendritic_cell)

Testing group su005_pre: (Fibroblast) vs (Macrophage, CD8_Tcell5, CD4_Tcell1, Dendritic_cell, CD8_Tcell4, Plasmacytoid_dendritic_cell, NK_cell, Malignant_cell, Plasma_cell, CD4_Tcell3, CD8_Tcell2, Bcell, CD4_Tcell4, CD8_Tcell3, CD8_Tcell6, CD8_Tcell1, CD4_Tcell2, CD4_Tcell5, Endotherial_cell, Myofibroblast)

Testing group su005_post: (Fibroblast) vs (CD4_Tcell1, CD8_Tcell3, CD8_Tcell6, CD4_Tcell5, CD4_Tcell4, CD8_Tcell2, CD4_Tcell3, CD8_Tcell1, CD8_Tcell4, NK_cell, CD4_Tcell2, CD8_Tcell5, Dendritic_cell, Bcell, Macrophage, Plasma_cell, Plasmacytoid_dendritic_cell, Myofibroblast, Endotherial_cell, Malignant_cell)

Testing group su006_post: (Fibroblast) vs (Macrophage, Plasma_cell, Dendritic_cell, CD8_Tcell5, Plasmacytoid_dendritic_cell, CD8_Tcell6, CD8_Tcell4, Bcell, NK_cell, CD4_Tcell1, CD8_Tcell3, CD4_Tcell2, CD8_Tcell2, CD8_Tcell1, CD4_Tcell3, CD4_Tcell4, CD4_Tcell5, Malignant_cell, Myofibroblast, Endotherial_cell)

Testing group su009_pre: (Fibroblast) vs (CD8_Tcell1, CD4_Tcell2, CD8_Tcell5, CD8_Tcell6, CD4_Tcell3, Malignant_cell, CD8_Tcell2, CD8_Tcell3, Dendritic_cell, CD4_Tcell4, CD4_Tcell1, NK_cell, CD4_Tcell5, CD8_Tcell4, Plasmacytoid_dendritic_cell, Macrophage, Plasma_cell, Bcell, Myofibroblast)

Testing group su009_post: (Fibroblast) vs (CD8_Tcell1, CD8_Tcell2, NK_cell, CD8_Tcell5, CD4_Tcell1, CD8_Tcell3, CD4_Tcell3, CD4_Tcell5, Malignant_cell, CD4_Tcell2, CD8_Tcell4, CD4_Tcell4, CD8_Tcell6, Macrophage, Dendritic_cell, Plasma_cell, Bcell, Plasmacytoid_dendritic_cell, Myofibroblast)

Testing group su008_post: (Fibroblast) vs (CD8_Tcell2, CD4_Tcell3, CD4_Tcell1, NK_cell, CD8_Tcell1, CD8_Tcell3, CD8_Tcell5, CD8_Tcell4, CD4_Tcell2, CD4_Tcell5, CD8_Tcell6, CD4_Tcell4, Macrophage, Malignant_cell, Plasma_cell, Dendritic_cell, Plasmacytoid_dendritic_cell, Bcell, Endotherial_cell, Myofibroblast)

Testing group su006_pre: (Fibroblast) vs (Plasma_cell, Macrophage, CD8_Tcell5, CD4_Tcell1, Bcell, Dendritic_cell, CD8_Tcell4, Plasmacytoid_dendritic_cell, CD8_Tcell6, CD8_Tcell2, NK_cell, CD8_Tcell3, CD4_Tcell3, CD8_Tcell1, CD4_Tcell2, CD4_Tcell4, CD4_Tcell5, Endotherial_cell, Malignant_cell, Myofibroblast)

Testing group su001_post: (Fibroblast) vs (CD8_Tcell1, CD4_Tcell2, CD8_Tcell3, CD4_Tcell3, CD4_Tcell5, CD4_Tcell4, CD8_Tcell6, CD8_Tcell2, NK_cell, CD4_Tcell1, Bcell, CD8_Tcell4, Macrophage, Dendritic_cell, Plasmacytoid_dendritic_cell, Plasma_cell, Endotherial_cell, Myofibroblast, CD8_Tcell5, Malignant_cell)

Warning message:
“Identity: Plasmacytoid_dendritic_cell not present in group su010_pre. Skipping su010_pre”
Warning message:
“Identity: Plasmacytoid_dendritic_cell not present in group su002_pre. Skipping su002_pre”
Testing group su002_post: (Plasmacytoid_dendritic_cell) vs (CD8_Tcell4, CD4_Tcell2, CD4_Tcell1, CD8_Tcell1, CD8_Tcell3, CD4_Tcell3, CD8_Tcell2, CD4_Tcell4, Bcell, CD4_Tcell5, CD8_Tcell6, Plasma_cell, Fibroblast, NK_cell, Dendritic_cell, Endotherial_cell, Macrophage, Myofibroblast)

Testing group su003_pre: (Plasmacytoid_dendritic_cell) vs (CD8_Tcell2, CD4_Tcell2, CD8_Tcell4, Fibroblast, Malignant_cell, CD4_Tcell4, CD4_Tcell1, Macrophage, CD4_Tcell3, Myofibroblast, CD8_Tcell1, NK_cell, Dendritic_cell, CD8_Tcell6, Endotherial_cell, Plasma_cell, CD8_Tcell3, CD4_Tcell5, CD8_Tcell5)

Warning message:
“Identity: Plasmacytoid_dendritic_cell not present in group su007_post. Skipping su007_post”
Testing group su010_post: (Plasmacytoid_dendritic_cell) vs (CD4_Tcell2, CD4_Tcell1, Malignant_cell, CD8_Tcell5, CD8_Tcell2, CD8_Tcell3, Macrophage, CD4_Tcell5, CD4_Tcell4, CD8_Tcell1, NK_cell, Dendritic_cell, Fibroblast, CD4_Tcell3, CD8_Tcell6, CD8_Tcell4, Plasma_cell)

Testing group su004_pre: (Plasmacytoid_dendritic_cell) vs (CD8_Tcell2, CD8_Tcell3, CD4_Tcell4, CD4_Tcell5, CD4_Tcell3, CD8_Tcell1, CD4_Tcell1, CD4_Tcell2, CD8_Tcell4, Bcell, NK_cell, CD8_Tcell6, Dendritic_cell, Macrophage, Fibroblast, Endotherial_cell, Malignant_cell, Myofibroblast, Plasma_cell)

Testing group su012_post: (Plasmacytoid_dendritic_cell) vs (CD8_Tcell4, CD8_Tcell5, CD4_Tcell1, CD8_Tcell1, CD8_Tcell6, CD4_Tcell2, CD4_Tcell4, CD8_Tcell2, Macrophage, Malignant_cell, CD8_Tcell3, CD4_Tcell3, CD4_Tcell5, Bcell, Fibroblast, Plasma_cell, NK_cell, Dendritic_cell)

Testing group su004_post: (Plasmacytoid_dendritic_cell) vs (CD8_Tcell2, CD4_Tcell4, CD4_Tcell5, CD4_Tcell1, CD4_Tcell2, Macrophage, CD4_Tcell3, CD8_Tcell1, CD8_Tcell3, CD8_Tcell6, NK_cell, CD8_Tcell5, CD8_Tcell4, Dendritic_cell, Fibroblast, Malignant_cell, Bcell, Myofibroblast, Plasma_cell, Endotherial_cell)

Testing group su003_post: (Plasmacytoid_dendritic_cell) vs (Malignant_cell, Dendritic_cell, Fibroblast, CD4_Tcell1, Myofibroblast, Macrophage, CD8_Tcell4, CD4_Tcell2, CD8_Tcell6, CD8_Tcell5, NK_cell, Endotherial_cell, CD8_Tcell3, CD4_Tcell4, CD8_Tcell1, CD8_Tcell2, Bcell, CD4_Tcell3, CD4_Tcell5, Plasma_cell)

Testing group su001_pre: (Plasmacytoid_dendritic_cell) vs (Malignant_cell, CD4_Tcell5, Dendritic_cell, NK_cell, CD4_Tcell1, Macrophage, Endotherial_cell, CD4_Tcell2, Fibroblast, CD8_Tcell3, CD8_Tcell1, CD4_Tcell4, CD4_Tcell3, CD8_Tcell4, CD8_Tcell6, CD8_Tcell2, Plasma_cell, Myofibroblast, CD8_Tcell5, Bcell)

Testing group su007_pre: (Plasmacytoid_dendritic_cell) vs (CD4_Tcell1, CD8_Tcell2, CD4_Tcell3, CD4_Tcell4, CD8_Tcell1, CD8_Tcell4, CD4_Tcell5, CD8_Tcell3, CD4_Tcell2, NK_cell, CD8_Tcell5, CD8_Tcell6, Macrophage, Malignant_cell, Dendritic_cell, Plasma_cell, Fibroblast, Myofibroblast, Endotherial_cell, Bcell)

Testing group su008_pre: (Plasmacytoid_dendritic_cell) vs (Plasma_cell, Dendritic_cell, Malignant_cell, Bcell, NK_cell, Macrophage, CD8_Tcell3, CD8_Tcell5, CD8_Tcell4, CD4_Tcell1, Fibroblast, Myofibroblast, CD8_Tcell1, CD8_Tcell2, CD4_Tcell5, CD8_Tcell6, CD4_Tcell2, CD4_Tcell3, CD4_Tcell4, Endotherial_cell)

Testing group su012_pre: (Plasmacytoid_dendritic_cell) vs (CD4_Tcell1, Malignant_cell, CD4_Tcell4, Macrophage, CD4_Tcell3, CD8_Tcell4, CD8_Tcell1, CD4_Tcell5, NK_cell, Bcell, CD4_Tcell2, Plasma_cell, CD8_Tcell5, Fibroblast, CD8_Tcell2, CD8_Tcell3, CD8_Tcell6, Dendritic_cell)

Testing group su005_pre: (Plasmacytoid_dendritic_cell) vs (Macrophage, CD8_Tcell5, CD4_Tcell1, Dendritic_cell, CD8_Tcell4, NK_cell, Malignant_cell, Plasma_cell, CD4_Tcell3, CD8_Tcell2, Bcell, CD4_Tcell4, CD8_Tcell3, Fibroblast, CD8_Tcell6, CD8_Tcell1, CD4_Tcell2, CD4_Tcell5, Endotherial_cell, Myofibroblast)

Testing group su005_post: (Plasmacytoid_dendritic_cell) vs (CD4_Tcell1, CD8_Tcell3, CD8_Tcell6, CD4_Tcell5, CD4_Tcell4, CD8_Tcell2, CD4_Tcell3, CD8_Tcell1, CD8_Tcell4, NK_cell, CD4_Tcell2, CD8_Tcell5, Dendritic_cell, Bcell, Macrophage, Plasma_cell, Fibroblast, Myofibroblast, Endotherial_cell, Malignant_cell)

Testing group su006_post: (Plasmacytoid_dendritic_cell) vs (Macrophage, Plasma_cell, Dendritic_cell, CD8_Tcell5, CD8_Tcell6, CD8_Tcell4, Bcell, Fibroblast, NK_cell, CD4_Tcell1, CD8_Tcell3, CD4_Tcell2, CD8_Tcell2, CD8_Tcell1, CD4_Tcell3, CD4_Tcell4, CD4_Tcell5, Malignant_cell, Myofibroblast, Endotherial_cell)

Testing group su009_pre: (Plasmacytoid_dendritic_cell) vs (CD8_Tcell1, CD4_Tcell2, CD8_Tcell5, CD8_Tcell6, CD4_Tcell3, Malignant_cell, CD8_Tcell2, CD8_Tcell3, Dendritic_cell, CD4_Tcell4, CD4_Tcell1, NK_cell, CD4_Tcell5, Fibroblast, CD8_Tcell4, Macrophage, Plasma_cell, Bcell, Myofibroblast)

Testing group su009_post: (Plasmacytoid_dendritic_cell) vs (CD8_Tcell1, CD8_Tcell2, NK_cell, CD8_Tcell5, CD4_Tcell1, CD8_Tcell3, CD4_Tcell3, CD4_Tcell5, Malignant_cell, CD4_Tcell2, CD8_Tcell4, CD4_Tcell4, CD8_Tcell6, Fibroblast, Macrophage, Dendritic_cell, Plasma_cell, Bcell, Myofibroblast)

Testing group su008_post: (Plasmacytoid_dendritic_cell) vs (CD8_Tcell2, CD4_Tcell3, CD4_Tcell1, NK_cell, CD8_Tcell1, CD8_Tcell3, CD8_Tcell5, CD8_Tcell4, CD4_Tcell2, CD4_Tcell5, CD8_Tcell6, CD4_Tcell4, Fibroblast, Macrophage, Malignant_cell, Plasma_cell, Dendritic_cell, Bcell, Endotherial_cell, Myofibroblast)

Testing group su006_pre: (Plasmacytoid_dendritic_cell) vs (Plasma_cell, Macrophage, CD8_Tcell5, CD4_Tcell1, Bcell, Dendritic_cell, CD8_Tcell4, Fibroblast, CD8_Tcell6, CD8_Tcell2, NK_cell, CD8_Tcell3, CD4_Tcell3, CD8_Tcell1, CD4_Tcell2, CD4_Tcell4, CD4_Tcell5, Endotherial_cell, Malignant_cell, Myofibroblast)

Testing group su001_post: (Plasmacytoid_dendritic_cell) vs (CD8_Tcell1, CD4_Tcell2, CD8_Tcell3, CD4_Tcell3, CD4_Tcell5, CD4_Tcell4, CD8_Tcell6, CD8_Tcell2, NK_cell, CD4_Tcell1, Bcell, CD8_Tcell4, Macrophage, Dendritic_cell, Plasma_cell, Fibroblast, Endotherial_cell, Myofibroblast, CD8_Tcell5, Malignant_cell)

Warning message:
“Identity: Endotherial_cell not present in group su010_pre. Skipping su010_pre”
Testing group su002_pre: (Endotherial_cell) vs (Macrophage, CD4_Tcell1, Dendritic_cell, NK_cell, Malignant_cell, CD8_Tcell2, CD8_Tcell6, CD4_Tcell4, CD4_Tcell5, Fibroblast, Myofibroblast, Plasma_cell, CD8_Tcell4, CD4_Tcell3, CD4_Tcell2, CD8_Tcell3, CD8_Tcell1, CD8_Tcell5)

Testing group su002_post: (Endotherial_cell) vs (CD8_Tcell4, CD4_Tcell2, CD4_Tcell1, CD8_Tcell1, CD8_Tcell3, CD4_Tcell3, CD8_Tcell2, CD4_Tcell4, Bcell, CD4_Tcell5, CD8_Tcell6, Plasma_cell, Fibroblast, NK_cell, Dendritic_cell, Macrophage, Myofibroblast, Plasmacytoid_dendritic_cell)

Testing group su003_pre: (Endotherial_cell) vs (CD8_Tcell2, CD4_Tcell2, CD8_Tcell4, Fibroblast, Malignant_cell, CD4_Tcell4, CD4_Tcell1, Macrophage, CD4_Tcell3, Myofibroblast, CD8_Tcell1, NK_cell, Plasmacytoid_dendritic_cell, Dendritic_cell, CD8_Tcell6, Plasma_cell, CD8_Tcell3, CD4_Tcell5, CD8_Tcell5)

Testing group su007_post: (Endotherial_cell) vs (Dendritic_cell, CD8_Tcell1, Bcell, CD8_Tcell2, CD4_Tcell5, CD4_Tcell1, CD4_Tcell3, CD8_Tcell4, CD4_Tcell4, Myofibroblast, Malignant_cell, CD8_Tcell3, Plasma_cell, NK_cell, CD8_Tcell6, CD4_Tcell2, Macrophage, Fibroblast, CD8_Tcell5)

Warning message:
“Identity: Endotherial_cell not present in group su010_post. Skipping su010_post”
Testing group su004_pre: (Endotherial_cell) vs (CD8_Tcell2, CD8_Tcell3, CD4_Tcell4, CD4_Tcell5, CD4_Tcell3, CD8_Tcell1, CD4_Tcell1, CD4_Tcell2, CD8_Tcell4, Bcell, NK_cell, CD8_Tcell6, Dendritic_cell, Macrophage, Fibroblast, Malignant_cell, Plasmacytoid_dendritic_cell, Myofibroblast, Plasma_cell)

Warning message:
“Identity: Endotherial_cell not present in group su012_post. Skipping su012_post”
Testing group su004_post: (Endotherial_cell) vs (CD8_Tcell2, CD4_Tcell4, CD4_Tcell5, CD4_Tcell1, CD4_Tcell2, Macrophage, CD4_Tcell3, CD8_Tcell1, CD8_Tcell3, CD8_Tcell6, NK_cell, CD8_Tcell5, CD8_Tcell4, Dendritic_cell, Fibroblast, Plasmacytoid_dendritic_cell, Malignant_cell, Bcell, Myofibroblast, Plasma_cell)

Testing group su003_post: (Endotherial_cell) vs (Malignant_cell, Dendritic_cell, Fibroblast, CD4_Tcell1, Myofibroblast, Macrophage, CD8_Tcell4, CD4_Tcell2, CD8_Tcell6, Plasmacytoid_dendritic_cell, CD8_Tcell5, NK_cell, CD8_Tcell3, CD4_Tcell4, CD8_Tcell1, CD8_Tcell2, Bcell, CD4_Tcell3, CD4_Tcell5, Plasma_cell)

Testing group su001_pre: (Endotherial_cell) vs (Malignant_cell, CD4_Tcell5, Dendritic_cell, NK_cell, CD4_Tcell1, Macrophage, CD4_Tcell2, Fibroblast, CD8_Tcell3, CD8_Tcell1, CD4_Tcell4, CD4_Tcell3, CD8_Tcell4, CD8_Tcell6, Plasmacytoid_dendritic_cell, CD8_Tcell2, Plasma_cell, Myofibroblast, CD8_Tcell5, Bcell)

Testing group su007_pre: (Endotherial_cell) vs (CD4_Tcell1, CD8_Tcell2, CD4_Tcell3, CD4_Tcell4, CD8_Tcell1, CD8_Tcell4, CD4_Tcell5, CD8_Tcell3, CD4_Tcell2, NK_cell, CD8_Tcell5, CD8_Tcell6, Macrophage, Malignant_cell, Dendritic_cell, Plasma_cell, Plasmacytoid_dendritic_cell, Fibroblast, Myofibroblast, Bcell)

Testing group su008_pre: (Endotherial_cell) vs (Plasmacytoid_dendritic_cell, Plasma_cell, Dendritic_cell, Malignant_cell, Bcell, NK_cell, Macrophage, CD8_Tcell3, CD8_Tcell5, CD8_Tcell4, CD4_Tcell1, Fibroblast, Myofibroblast, CD8_Tcell1, CD8_Tcell2, CD4_Tcell5, CD8_Tcell6, CD4_Tcell2, CD4_Tcell3, CD4_Tcell4)

Warning message:
“Identity: Endotherial_cell not present in group su012_pre. Skipping su012_pre”
Testing group su005_pre: (Endotherial_cell) vs (Macrophage, CD8_Tcell5, CD4_Tcell1, Dendritic_cell, CD8_Tcell4, Plasmacytoid_dendritic_cell, NK_cell, Malignant_cell, Plasma_cell, CD4_Tcell3, CD8_Tcell2, Bcell, CD4_Tcell4, CD8_Tcell3, Fibroblast, CD8_Tcell6, CD8_Tcell1, CD4_Tcell2, CD4_Tcell5, Myofibroblast)

Testing group su005_post: (Endotherial_cell) vs (CD4_Tcell1, CD8_Tcell3, CD8_Tcell6, CD4_Tcell5, CD4_Tcell4, CD8_Tcell2, CD4_Tcell3, CD8_Tcell1, CD8_Tcell4, NK_cell, CD4_Tcell2, CD8_Tcell5, Dendritic_cell, Bcell, Macrophage, Plasma_cell, Fibroblast, Plasmacytoid_dendritic_cell, Myofibroblast, Malignant_cell)

Testing group su006_post: (Endotherial_cell) vs (Macrophage, Plasma_cell, Dendritic_cell, CD8_Tcell5, Plasmacytoid_dendritic_cell, CD8_Tcell6, CD8_Tcell4, Bcell, Fibroblast, NK_cell, CD4_Tcell1, CD8_Tcell3, CD4_Tcell2, CD8_Tcell2, CD8_Tcell1, CD4_Tcell3, CD4_Tcell4, CD4_Tcell5, Malignant_cell, Myofibroblast)

Warning message:
“Identity: Endotherial_cell not present in group su009_pre. Skipping su009_pre”
Warning message:
“Identity: Endotherial_cell not present in group su009_post. Skipping su009_post”
Testing group su008_post: (Endotherial_cell) vs (CD8_Tcell2, CD4_Tcell3, CD4_Tcell1, NK_cell, CD8_Tcell1, CD8_Tcell3, CD8_Tcell5, CD8_Tcell4, CD4_Tcell2, CD4_Tcell5, CD8_Tcell6, CD4_Tcell4, Fibroblast, Macrophage, Malignant_cell, Plasma_cell, Dendritic_cell, Plasmacytoid_dendritic_cell, Bcell, Myofibroblast)

Testing group su006_pre: (Endotherial_cell) vs (Plasma_cell, Macrophage, CD8_Tcell5, CD4_Tcell1, Bcell, Dendritic_cell, CD8_Tcell4, Plasmacytoid_dendritic_cell, Fibroblast, CD8_Tcell6, CD8_Tcell2, NK_cell, CD8_Tcell3, CD4_Tcell3, CD8_Tcell1, CD4_Tcell2, CD4_Tcell4, CD4_Tcell5, Malignant_cell, Myofibroblast)

Testing group su001_post: (Endotherial_cell) vs (CD8_Tcell1, CD4_Tcell2, CD8_Tcell3, CD4_Tcell3, CD4_Tcell5, CD4_Tcell4, CD8_Tcell6, CD8_Tcell2, NK_cell, CD4_Tcell1, Bcell, CD8_Tcell4, Macrophage, Dendritic_cell, Plasmacytoid_dendritic_cell, Plasma_cell, Fibroblast, Myofibroblast, CD8_Tcell5, Malignant_cell)

Warning message:
“Identity: Myofibroblast not present in group su010_pre. Skipping su010_pre”
Testing group su002_pre: (Myofibroblast) vs (Macrophage, CD4_Tcell1, Dendritic_cell, NK_cell, Malignant_cell, CD8_Tcell2, CD8_Tcell6, CD4_Tcell4, CD4_Tcell5, Fibroblast, Plasma_cell, CD8_Tcell4, CD4_Tcell3, CD4_Tcell2, CD8_Tcell3, CD8_Tcell1, CD8_Tcell5, Endotherial_cell)

Testing group su002_post: (Myofibroblast) vs (CD8_Tcell4, CD4_Tcell2, CD4_Tcell1, CD8_Tcell1, CD8_Tcell3, CD4_Tcell3, CD8_Tcell2, CD4_Tcell4, Bcell, CD4_Tcell5, CD8_Tcell6, Plasma_cell, Fibroblast, NK_cell, Dendritic_cell, Endotherial_cell, Macrophage, Plasmacytoid_dendritic_cell)

Testing group su003_pre: (Myofibroblast) vs (CD8_Tcell2, CD4_Tcell2, CD8_Tcell4, Fibroblast, Malignant_cell, CD4_Tcell4, CD4_Tcell1, Macrophage, CD4_Tcell3, CD8_Tcell1, NK_cell, Plasmacytoid_dendritic_cell, Dendritic_cell, CD8_Tcell6, Endotherial_cell, Plasma_cell, CD8_Tcell3, CD4_Tcell5, CD8_Tcell5)

Testing group su007_post: (Myofibroblast) vs (Dendritic_cell, CD8_Tcell1, Bcell, CD8_Tcell2, CD4_Tcell5, CD4_Tcell1, CD4_Tcell3, CD8_Tcell4, CD4_Tcell4, Malignant_cell, CD8_Tcell3, Plasma_cell, NK_cell, Endotherial_cell, CD8_Tcell6, CD4_Tcell2, Macrophage, Fibroblast, CD8_Tcell5)

Warning message:
“Identity: Myofibroblast not present in group su010_post. Skipping su010_post”
Testing group su004_pre: (Myofibroblast) vs (CD8_Tcell2, CD8_Tcell3, CD4_Tcell4, CD4_Tcell5, CD4_Tcell3, CD8_Tcell1, CD4_Tcell1, CD4_Tcell2, CD8_Tcell4, Bcell, NK_cell, CD8_Tcell6, Dendritic_cell, Macrophage, Fibroblast, Endotherial_cell, Malignant_cell, Plasmacytoid_dendritic_cell, Plasma_cell)

Warning message:
“Identity: Myofibroblast not present in group su012_post. Skipping su012_post”
Testing group su004_post: (Myofibroblast) vs (CD8_Tcell2, CD4_Tcell4, CD4_Tcell5, CD4_Tcell1, CD4_Tcell2, Macrophage, CD4_Tcell3, CD8_Tcell1, CD8_Tcell3, CD8_Tcell6, NK_cell, CD8_Tcell5, CD8_Tcell4, Dendritic_cell, Fibroblast, Plasmacytoid_dendritic_cell, Malignant_cell, Bcell, Plasma_cell, Endotherial_cell)

Testing group su003_post: (Myofibroblast) vs (Malignant_cell, Dendritic_cell, Fibroblast, CD4_Tcell1, Macrophage, CD8_Tcell4, CD4_Tcell2, CD8_Tcell6, Plasmacytoid_dendritic_cell, CD8_Tcell5, NK_cell, Endotherial_cell, CD8_Tcell3, CD4_Tcell4, CD8_Tcell1, CD8_Tcell2, Bcell, CD4_Tcell3, CD4_Tcell5, Plasma_cell)

Testing group su001_pre: (Myofibroblast) vs (Malignant_cell, CD4_Tcell5, Dendritic_cell, NK_cell, CD4_Tcell1, Macrophage, Endotherial_cell, CD4_Tcell2, Fibroblast, CD8_Tcell3, CD8_Tcell1, CD4_Tcell4, CD4_Tcell3, CD8_Tcell4, CD8_Tcell6, Plasmacytoid_dendritic_cell, CD8_Tcell2, Plasma_cell, CD8_Tcell5, Bcell)

Testing group su007_pre: (Myofibroblast) vs (CD4_Tcell1, CD8_Tcell2, CD4_Tcell3, CD4_Tcell4, CD8_Tcell1, CD8_Tcell4, CD4_Tcell5, CD8_Tcell3, CD4_Tcell2, NK_cell, CD8_Tcell5, CD8_Tcell6, Macrophage, Malignant_cell, Dendritic_cell, Plasma_cell, Plasmacytoid_dendritic_cell, Fibroblast, Endotherial_cell, Bcell)

Testing group su008_pre: (Myofibroblast) vs (Plasmacytoid_dendritic_cell, Plasma_cell, Dendritic_cell, Malignant_cell, Bcell, NK_cell, Macrophage, CD8_Tcell3, CD8_Tcell5, CD8_Tcell4, CD4_Tcell1, Fibroblast, CD8_Tcell1, CD8_Tcell2, CD4_Tcell5, CD8_Tcell6, CD4_Tcell2, CD4_Tcell3, CD4_Tcell4, Endotherial_cell)

Warning message:
“Identity: Myofibroblast not present in group su012_pre. Skipping su012_pre”
Testing group su005_pre: (Myofibroblast) vs (Macrophage, CD8_Tcell5, CD4_Tcell1, Dendritic_cell, CD8_Tcell4, Plasmacytoid_dendritic_cell, NK_cell, Malignant_cell, Plasma_cell, CD4_Tcell3, CD8_Tcell2, Bcell, CD4_Tcell4, CD8_Tcell3, Fibroblast, CD8_Tcell6, CD8_Tcell1, CD4_Tcell2, CD4_Tcell5, Endotherial_cell)

Testing group su005_post: (Myofibroblast) vs (CD4_Tcell1, CD8_Tcell3, CD8_Tcell6, CD4_Tcell5, CD4_Tcell4, CD8_Tcell2, CD4_Tcell3, CD8_Tcell1, CD8_Tcell4, NK_cell, CD4_Tcell2, CD8_Tcell5, Dendritic_cell, Bcell, Macrophage, Plasma_cell, Fibroblast, Plasmacytoid_dendritic_cell, Endotherial_cell, Malignant_cell)

Testing group su006_post: (Myofibroblast) vs (Macrophage, Plasma_cell, Dendritic_cell, CD8_Tcell5, Plasmacytoid_dendritic_cell, CD8_Tcell6, CD8_Tcell4, Bcell, Fibroblast, NK_cell, CD4_Tcell1, CD8_Tcell3, CD4_Tcell2, CD8_Tcell2, CD8_Tcell1, CD4_Tcell3, CD4_Tcell4, CD4_Tcell5, Malignant_cell, Endotherial_cell)

Testing group su009_pre: (Myofibroblast) vs (CD8_Tcell1, CD4_Tcell2, CD8_Tcell5, CD8_Tcell6, CD4_Tcell3, Malignant_cell, CD8_Tcell2, CD8_Tcell3, Dendritic_cell, CD4_Tcell4, CD4_Tcell1, NK_cell, CD4_Tcell5, Fibroblast, CD8_Tcell4, Plasmacytoid_dendritic_cell, Macrophage, Plasma_cell, Bcell)

Testing group su009_post: (Myofibroblast) vs (CD8_Tcell1, CD8_Tcell2, NK_cell, CD8_Tcell5, CD4_Tcell1, CD8_Tcell3, CD4_Tcell3, CD4_Tcell5, Malignant_cell, CD4_Tcell2, CD8_Tcell4, CD4_Tcell4, CD8_Tcell6, Fibroblast, Macrophage, Dendritic_cell, Plasma_cell, Bcell, Plasmacytoid_dendritic_cell)

Testing group su008_post: (Myofibroblast) vs (CD8_Tcell2, CD4_Tcell3, CD4_Tcell1, NK_cell, CD8_Tcell1, CD8_Tcell3, CD8_Tcell5, CD8_Tcell4, CD4_Tcell2, CD4_Tcell5, CD8_Tcell6, CD4_Tcell4, Fibroblast, Macrophage, Malignant_cell, Plasma_cell, Dendritic_cell, Plasmacytoid_dendritic_cell, Bcell, Endotherial_cell)

Testing group su006_pre: (Myofibroblast) vs (Plasma_cell, Macrophage, CD8_Tcell5, CD4_Tcell1, Bcell, Dendritic_cell, CD8_Tcell4, Plasmacytoid_dendritic_cell, Fibroblast, CD8_Tcell6, CD8_Tcell2, NK_cell, CD8_Tcell3, CD4_Tcell3, CD8_Tcell1, CD4_Tcell2, CD4_Tcell4, CD4_Tcell5, Endotherial_cell, Malignant_cell)

Testing group su001_post: (Myofibroblast) vs (CD8_Tcell1, CD4_Tcell2, CD8_Tcell3, CD4_Tcell3, CD4_Tcell5, CD4_Tcell4, CD8_Tcell6, CD8_Tcell2, NK_cell, CD4_Tcell1, Bcell, CD8_Tcell4, Macrophage, Dendritic_cell, Plasmacytoid_dendritic_cell, Plasma_cell, Fibroblast, Endotherial_cell, CD8_Tcell5, Malignant_cell)